DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and RACGAP1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_024304726.1 Gene:RACGAP1 / 29127 HGNCID:9804 Length:651 Species:Homo sapiens


Alignment Length:649 Identity:228/649 - (35%)
Similarity:338/649 - (52%) Gaps:86/649 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALSALASFDDLRRCMQVLTDGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGD 65
            |.|:....|:.|.|.:::|::|. |.:|::..:.||.:.:|......|..:.::.|.|:.|:...
Human    23 MMLNVRNLFEQLVRRVEILSEGN-EVQFIQLAKDFEDFRKKWQRTDHELGKYKDLLMKAETERSA 86

  Fly    66 LEGKLFHARRIIDMEIKARRQAEHERDAMESKIMAVADLLRHERN----LNNETRDKLAFLHT-L 125
            |:.||.|||..:|:|||.|::||.:.:.:|.:|..:.::|..:.:    |:.|.:..||||:. .
Human    87 LDVKLKHARNQVDVEIKRRQRAEADCEKLERQIQLIREMLMCDTSGSIQLSEEQKSALAFLNRGQ 151

  Fly   126 PSSRKRKSLNAVREDKSYGDINSTGSLLSDLSITHSEDDFLD-----VRTSK-SWREHRPSLPKN 184
            |||.     ||  .:|....|:.:||:|||:|...: |:.||     |:|.| ..||.|.|..:.
Human   152 PSSS-----NA--GNKRLSTIDESGSILSDISFDKT-DESLDWDSSLVKTFKLKKREKRRSTSRQ 208

  Fly   185 QIPSVGNKRSRLSTGLNGSMSGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDG 249
            .:                  .|......|:|  |:|..|:       ||.|...|.|.||:|.||
Human   209 FV------------------DGPPGPVKKTR--SIGSAVD-------QGNESIVAKTTVTVPNDG 246

  Fly   250 QGVIRAESTIESLPVIAGNERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRP 314
             |.|.|.||||::|....:.|....|......|.|......|.|..:::        ||| |...
Human   247 -GPIEAVSTIETVPYWTRSRRKTGTLQPWNSDSTLNSRQLEPRTETDSV--------GTP-QSNG 301

  Fly   315 LMRNHTFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQ-TGTPTTKT 378
            .||.|.|..||.::.::||.|.|||:||.:.|:||||.|..|.:||....:.|:|. .||| .|.
Human   302 GMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPTLIGTP-VKI 365

  Fly   379 MTGYVTDFAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGN 443
            ..|.:.||....:||||:::||||||||.|||||.||||:|..:|..|.|||:|||.|..|.|..
Human   366 GEGMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSK 430

  Fly   444 T-DIYVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFL 507
            . ||:.:|..:|||||:|.|||:.....:.|..|.:..|...:...:.::|.:||||||||||||
Human   431 VDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFL 495

  Fly   508 ILHFQRIAQCPVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLELPVSFWEQ 572
            ::|.||:||.|...|.:.|::.:||||||.::.|:||...:..::..|.:|::.||.||:.:|.|
Human   496 MIHLQRVAQSPHTKMDVANLAKVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQ 560

  Fly   573 YIV-----IDPTR---------TPATVIKRVPSNKNDLLSLYATPFKGGTIKKRKFYGTPPASA 622
            :::     |||..         ||.|     |..|..||....||       :.:...||.:|:
Human   561 FMMVEQENIDPLHVIENSNAFSTPQT-----PDIKVSLLGPVTTP-------EHQLLKTPSSSS 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 21/47 (45%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 87/189 (46%)
RACGAP1XP_024304726.1 SMC_N 32..>124 CDD:330553 28/92 (30%)
C1 306..354 CDD:237996 21/47 (45%)
RhoGAP_MgcRacGAP 365..558 CDD:239847 87/192 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 143 1.000 Domainoid score I4660
eggNOG 1 0.900 - - E1_KOG3564
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8077
Inparanoid 1 1.050 316 1.000 Inparanoid score I2552
Isobase 1 0.950 - 0.928771 Normalized mean entropy S4674
OMA 1 1.010 - - QHG49807
OrthoDB 1 1.010 - - D184774at33208
OrthoFinder 1 1.000 - - FOG0004815
OrthoInspector 1 1.000 - - oto89857
orthoMCL 1 0.900 - - OOG6_106233
Panther 1 1.100 - - LDO PTHR46199
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4412
SonicParanoid 1 1.000 - - X3396
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.820

Return to query results.
Submit another query.