DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and Myo9b

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_038950134.1 Gene:Myo9b / 25486 RGDID:3146 Length:2156 Species:Rattus norvegicus


Alignment Length:570 Identity:124/570 - (21%)
Similarity:217/570 - (38%) Gaps:96/570 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KCAGYAAETARIQNELDKSLTKMGDLEGKLFHARRIIDMEIKARRQAEHERDAMESKIMAVADLL 105
            :.|| ||.|...:..:..|.:.:..|..........:|.::.|::.|.|::.:.:......|.|.
  Rat  1347 RTAG-AALTPTEERRISFSTSDVSKLSPVKVQTSTEVDGDLSAKKPAGHKKKSEDPSAGPDAGLP 1410

  Fly   106 RHERNLNNETRDKLAFLHTLPSSRKRKSLNAVREDKSYGDINSTGSLLSDLSITHSEDDFLDVRT 170
            ...:. ::::..|..|||  .:..|:.||..|.|.:..|     |....:.....:    |||.:
  Rat  1411 TGSQG-DSKSAFKRLFLH--KAKDKKPSLEGVEETEGSG-----GQAAQEAPARKT----LDVPS 1463

  Fly   171 SKSWREHRPSLP----KNQIPSVG----NKRSR-------------------LSTGLNGSMSGTT 208
            |:..|......|    ||:...||    :::.|                   |...:|...|..|
  Rat  1464 SQQHRHTTGEKPLKGKKNRNRKVGQITVSEKWRESVFRKITNANELKFLDEFLLNKVNDLRSQKT 1528

  Fly   209 PTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKV--TIPQDGQGVIRAESTIESLPVIAGNERI 271
            |             :|...:   :..|||.:..|.  ::| :|:..:..:..:|:..::..|...
  Rat  1529 P-------------IESLFI---EATERFRSNIKTMYSVP-NGKIHVGYKDLMENYQIVVSNLAA 1576

  Fly   272 GDGLSSTPR-----RSVLKEAT----APPLTPVNAMAPHVVAESGTPLQHRPLMRN--HTFSQKT 325
            ..|...|..     :|:|.|.|    .....||.    ...|:.....|.|.:..:  |.|:...
  Rat  1577 ERGEKDTNLVLNVFQSLLDEFTRSYNKTDFEPVK----QGKAQKKKRKQERAVQEHNGHVFASYQ 1637

  Fly   326 FLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMT-----GYVTD 385
            .....:|.||...|......|.|..|.:.||..|.:.:...| ..||...::...     |...|
  Rat  1638 VNIPQSCEQCLSYIWLMDKALLCSVCKMTCHKKCVHKIQSYC-SYTGRRKSELGAEPGHFGVCVD 1701

  Fly   386 FAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGNTDIYVLC 450
            ...|....:|.::...:..:|..||...||||.|.:....:.|::......||..|.:..|:.:.
  Rat  1702 SLTSDKASVPIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQALQTDPATVKLEDFPIHAIT 1766

  Fly   451 CCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIA 515
            ..:|.:||.|.|||:..:|:.||..||:.|:.:.....:...:..||:||..:|..||.|..::|
  Rat  1767 GVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLAAIYAVLDHLPEANHTSLERLIFHLVKVA 1831

  Fly   516 QCPVVLMPIDNIS-----LIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMK 560
                :|..::.:|     :||.|.::  ..||...     .:.:.|.|:|
  Rat  1832 ----LLEDVNRMSPGALAIIFAPCLL--RCPDNSD-----PLTSMKDVLK 1870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 12/47 (26%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 49/185 (26%)
Myo9bXP_038950134.1 Ubiquitin_like_fold 16..112 CDD:421700
MYSc_Myo9 160..977 CDD:276836
IQ 1014..1033 CDD:197470
IQ 1036..1058 CDD:197470
PTZ00449 <1145..1493 CDD:185628 34/158 (22%)
C1_Myosin-IXb 1626..1683 CDD:410434 13/57 (23%)
RhoGAP 1696..1881 CDD:413382 49/186 (26%)
MCP_Sipho 1941..>2064 CDD:411416
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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