DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and gei-1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_497694.3 Gene:gei-1 / 175436 WormBaseID:WBGene00001559 Length:1510 Species:Caenorhabditis elegans


Alignment Length:507 Identity:102/507 - (20%)
Similarity:186/507 - (36%) Gaps:151/507 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 LPSSRKRKSLNAVREDKSYGDINSTG-SLLSDLSITHSEDDFLDVRTSKSWREHRPSLPK--NQI 186
            ||.|.|..:.|:.....|..:..:.. |:.:|...||               |.:.:||:  |.:
 Worm   830 LPKSTKTTNSNSTSNSNSLDNKKTDNISMFNDGYYTH---------------EIKTALPRHHNIL 879

  Fly   187 PSVGNKRSRLSTGLNGSMSGTTPTTGK---SRRSSVGIGVE-------QHTVDVGQ--------- 232
            .:|..:..:::|.....:|.:....|:   ::||..|:|..       .||..:.|         
 Worm   880 TTVKPENLKVNTEKIDIISSSDEPIGRTALTKRSDSGLGSSLSRSPSGPHTQRIRQSLLPYSNAT 944

  Fly   233 ----GAERFCATTKVTIPQDGQ-----GVIRAESTIESLPVIAGNERIGDGLSSTPRRSVLKEAT 288
                .|...|:....|...|.|     .::....:|:||.:|.        ::...:.:.|:   
 Worm   945 SSSASAYSCCSWGSSTKLLDEQQPFFTDMVELARSIDSLNLIE--------MTRLRKTAFLR--- 998

  Fly   289 APPLTPVNAMAPHVVAESGTPL---QHRPLMRNHTFSQKTFLRGDNCVQCQKRIR--------FG 342
                  ::::....:...|..|   ....|...|.:|.:..::.......|||.:        ||
 Worm   999 ------LSSILERNIEGKGVGLVDPDQEELPSKHVWSVQRLIKRMKINDGQKREKDVDGDGAVFG 1057

  Fly   343 AVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEIEA 407
             |||           |..:..|...:|:   |..:.|     .|..:|||               
 Worm  1058 -VGL-----------DVIFNRTGYFLPR---PILEVM-----KFLRNIAP--------------- 1087

  Fly   408 RGLTEVGLYR---LSSSEREYKALKEQFLRGKATPHLGNTDIYV------------LCCCVKDFL 457
               ..||::|   :.|...|.:::.|.:        .||||::|            :...:|.:.
 Worm  1088 ---ETVGIFRKNGVKSRIAELRSIIESY--------SGNTDVFVGENLLDSTQVHDVADLLKQYF 1141

  Fly   458 RSLTEPLIPTSQWKDFAN---AVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIAQ-CP 518
            |.|.|||:.....:.|||   .|.:.:..||   |..::..||..||:.|..|:|..:.::: ..
 Worm  1142 RDLPEPLMTVKMSEVFANICSVVPDVERITA---LQYAILLLPDENREALKTLLLFLKEVSRNSQ 1203

  Fly   519 VVLMPIDNISLIFGPTI--VGYS-----TPDPDQHAIY--TEVFTQKQVMKA 561
            |..|...|:|:.|.|::  :|.|     ||...:|...  |.:.::|::.:|
 Worm  1204 VNNMTAQNLSVCFTPSLFQLGASRLDKVTPGNRRHKTVGATGLPSEKEMKEA 1255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 12/55 (22%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 49/209 (23%)
gei-1NP_497694.3 SAM_superfamily 444..499 CDD:387673
RhoGAP_DLC1 1052..1279 CDD:239840 59/253 (23%)
SRPBCC 1302..1501 CDD:387369
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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