DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and F23H11.4

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_497289.1 Gene:F23H11.4 / 175253 WormBaseID:WBGene00017760 Length:1003 Species:Caenorhabditis elegans


Alignment Length:596 Identity:111/596 - (18%)
Similarity:187/596 - (31%) Gaps:197/596 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 TLPSSRKRKSLNA-VREDKSYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIP 187
            :|.||:|.|.|:. :|        |...|...|...|...:...|::....:|......|...| 
 Worm   342 SLTSSKKEKRLHCRLR--------NMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILI- 397

  Fly   188 SVGNKRS----------------------RLSTGLNG--------SMSGTT----PTTGKSRRSS 218
            .||.||:                      .|:.||..        ::.|.|    .|||:.:..|
 Worm   398 HVGEKRNVISFIPEDPPNLWMFFLSEAWLSLNYGLTSVLRDADELTICGITWIKHGTTGEWKICS 462

  Fly   219 VGI-GVEQH--TVDV-----GQGAERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNERIGDGL 275
            .|| |:..|  .||.     .:.:||..|.|...            ||:.|:        |||.|
 Worm   463 AGINGLTLHYMLVDAKDRIYNRNSERSDAGTSFM------------STVGSI--------IGDEL 507

  Fly   276 SSTPRRSVL---------------KEATAPPLTPVNAMAPHVVAESGTPLQH------RPLMRNH 319
            .....|.|:               :....|....::.:..::.:...:...|      ..|.|..
 Worm   508 VEVDLRKVMTMRERIDKSEFCPNARHKRGPFSITLHGVTLYIDSRDDSTTSHWYEAIEALLKRPA 572

  Fly   320 TFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVT 384
            |..:...|.|||                                                     
 Worm   573 TRLENLRLTGDN----------------------------------------------------- 584

  Fly   385 DFAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLR---GKATPHLGNTDI 446
                     ||.::..|:..:.|.|:...|:||.:....|.|.:..:...   |....|..:..:
 Worm   585 ---------IPVIVDKCIRFVSAYGMKCEGIYRRNGKVTEAKTILTKLTEDPVGYYPVHENDETV 640

  Fly   447 YVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQL----PQANRDTLAFL 507
            |.:...::.|.|.|..||.|:|...|..:..    |::..|.|.....||    ...:|.||..|
 Worm   641 YAVADVLRQFFRKLDAPLFPSSSQADLFDLA----TESQSDELCARYAQLINTFELVHRSTLKKL 701

  Fly   508 ILHFQRIAQ-CPVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLELPVSF-- 569
            |.|.:.::: .......::|::.:|..::  :.|...|: .:::|.:..:  :..|:.|...:  
 Worm   702 IGHLKNVSEHAQENRASVENLAKVFAASL--FLTDAMDE-KVFSESYNHQ--INVLIHLTTGYDV 761

  Fly   570 ---------WEQYIVIDPTRTPATVIKRVP-----------SNK--NDLLSLYATPFKGGTIKKR 612
                     ..:.:|.|..:......|..|           .|:  |..:||.:.......|.||
 Worm   762 VFQISIEEELSRQMVNDAEKKSFNAKKPSPDFIVAIHVWEKENRPFNVKMSLASEEVCREAIAKR 826

  Fly   613 KFYGTPPASAH 623
            .|.| ||.|.:
 Worm   827 GFDG-PPDSPY 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 5/47 (11%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 39/207 (19%)
F23H11.4NP_497289.1 RhoGAP_ARAP 571..759 CDD:239850 44/258 (17%)
RA_ARAPs 790..882 CDD:340633 13/48 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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