DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and spv-1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_495666.4 Gene:spv-1 / 174278 WormBaseID:WBGene00014051 Length:966 Species:Caenorhabditis elegans


Alignment Length:676 Identity:126/676 - (18%)
Similarity:217/676 - (32%) Gaps:257/676 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DDLRRCMQV-LTDGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSL------TKMGDLE 67
            |.:|..::| .|..|      :.|...|:.:||    :..|.|::.|..|..      |:....|
 Worm   299 DTVRNALKVEWTKAT------KSLHDCEESYEK----SKITLRMREEALKKARESCLRTESSPPE 353

  Fly    68 GKLFHARRIIDMEIKARRQAEHERDAMESKIMAVADLLRHER----------------------- 109
            .:....||.::.:.:|..:|..:::..|.:::::...||.:|                       
 Worm   354 REASRRRRDLEKKSRAVEEAMIKKEEAERQVVSITAELRKKRRDIDKTKESVVERLRELIFQCEQ 418

  Fly   110 -------------------------NLNNETRD------KLAFLHTLPSSRKRKSLNAVREDKSY 143
                                     .|:|.|||      .:|||.||| :|...|.:.||.|:|.
 Worm   419 TTKACTVHYFTSLAALWARLPGAFHELSNATRDYQPGTEYMAFLQTLP-TRAASSSSLVRSDRSI 482

  Fly   144 GDINSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGLNGSMSGTT 208
            .:  ...|.....|:|                    ||.:|.|              |....|..
 Worm   483 DE--GVASCDGSSSLT--------------------SLRRNAI--------------NPDDEGAL 511

  Fly   209 PTTGKSRRSS-VGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNERIG 272
            |.|.:.:::| .|...:.|.:                                            
 Worm   512 PDTKRHKKTSYAGRTFDNHEI-------------------------------------------- 532

  Fly   273 DGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQCQK 337
                          :||       |.:.|:                    |:| ::...|..|..
 Worm   533 --------------STA-------AQSHHI--------------------QRT-VQPSKCSACDT 555

  Fly   338 RIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGY---VTDFAPSI--APM---- 393
            ......|  :|.||..:.|..|             .|..:.:.|.   :.|...||  .|:    
 Worm   556 LSILYTV--QCIDCGGQWHKAC-------------FPRIQQVCGQAAKLVDRRTSIFGVPLKGLL 605

  Fly   394 ------IPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPH--LGNTDIYVLC 450
                  ||.:|...:::::.|||...|:||....:.:.:.:...|.|..:...  |.|.:...|.
 Worm   606 EHQNRHIPLIIEKSIDQLQRRGLRAKGIYRTCGVKSKIEEICNAFERSSSDDEVCLDNENPMNLA 670

  Fly   451 CCVKDFLRSLTEPLIPTSQWKDF---------ANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAF 506
            ..||.:||.|.|||:....:.||         |.|..:...:...:.|.:..::||..|.:||.|
 Worm   671 SVVKLYLRKLPEPLLTFELYDDFVRLGTECCSAQASGSNCEEERVEQLRQLARKLPVHNYETLKF 735

  Fly   507 LILHFQRIAQC-PVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLELPV--- 567
            ::||..|::.. .|.||...|:|.:..|:::..|....|    :|......|.....:|:.:   
 Worm   736 IMLHLNRVSWFHEVNLMSTSNLSTVIAPSLIWMSPKRID----HTSAIMHTQYTNKAIEVMIRNS 796

  Fly   568 -------------SFWEQYIVIDPTR 580
                         ||:.:|.|.:|.:
 Worm   797 YHIFGMDRQADWQSFFSRYSVEEPPK 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 10/47 (21%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 53/231 (23%)
spv-1NP_495666.4 FCH 195..278 CDD:214492
C1 537..583 CDD:197519 12/81 (15%)
RhoGAP 610..796 CDD:214618 47/189 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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