DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and Arhgap5

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_033836.2 Gene:Arhgap5 / 11855 MGIID:1332637 Length:1503 Species:Mus musculus


Alignment Length:513 Identity:107/513 - (20%)
Similarity:185/513 - (36%) Gaps:139/513 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 RNLNNET-RDKLAFLHTLPSSRKR-KSLNAVREDKSYGD--------------------INSTGS 151
            :|...:| |..||....:.||... :.|:.:.:.|.|.|                    :|:|..
Mouse  1068 KNPRKQTSRVPLAHPEDMDSSDNYVEPLDTIFKQKGYSDEIYVVPDDSQNRIIKIRNSFVNNTQG 1132

  Fly   152 LLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGLNGSMSGTTP-TTGKSR 215
                    ..|:.|.| ||||...|.|||..|.:..::.:|........:...|.... ||.|::
Mouse  1133 --------DEENGFSD-RTSKGHGERRPSKYKYKSKTLFSKAKSYYRRTHSDASDDEAFTTSKTK 1188

  Fly   216 RSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNERIGDGLSSTPR 280
            |..      :|     :|:|.....:.|...:.|         |:: |.|..::.:.|       
Mouse  1189 RKG------RH-----RGSEEDPLLSPVETWKGG---------IDN-PAITSDQEVDD------- 1225

  Fly   281 RSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQCQKRIRFGAVG 345
             ..:|:.|            |.|.|.          :......|||                   
Mouse  1226 -KKIKKKT------------HKVKED----------KKQKKKTKTF------------------- 1248

  Fly   346 LRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEIEARGL 410
                :.|.|.:.:..|.         |.|        :.|...:..| ||..:..||..||..||
Mouse  1249 ----NPPTRRNWESNYF---------GMP--------LQDLVTAEKP-IPLFVEKCVEFIEDTGL 1291

  Fly   411 TEVGLYRLSSSEREYKALKEQFLRGKATPHLGNTDIYV--LCCCVKDFLRSLTEPLIPTSQWKDF 473
            ...||||:|.::.:...:::||.:.. ..:|.:.::.|  :...:|.|...|.:||||.|...:.
Mouse  1292 CTEGLYRVSGNKTDQDNIQKQFDQDH-NINLASMEVTVNAVAGALKAFFADLPDPLIPYSLHPEL 1355

  Fly   474 ANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIA-QCPVVLMPIDNISLIFGPTIVG 537
            ..|.:.||.......|.:.||:....|.|...::|.|..|:: |..:.||..||:|:.|.||:: 
Mouse  1356 LEAAKIPDKTERFHALKEIVKKFHPVNYDVFRYVITHLNRVSQQNKINLMTADNLSICFWPTLM- 1419

  Fly   538 YSTPDPDQHAIYTEVFTQKQVMKALLELPVSFWEQYIVID--------PTRTPATVIK 587
              .||.:.....:.....:.|::..::....|:....:::        ||..|..:::
Mouse  1420 --RPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEIVETANTVAPPPTSNPGQLVE 1475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 6/47 (13%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 50/191 (26%)
Arhgap5NP_033836.2 P-loop_NTPase 31..246 CDD:393306
RhoGAP-FF1 260..338 CDD:374593
FF 368..420 CDD:128718
FF 428..481 CDD:128718
FF 484..533 CDD:128718
RhoGAP_p190 1261..1445 CDD:239838 52/205 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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