DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and arhgap35

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_004917008.1 Gene:arhgap35 / 100498460 XenbaseID:XB-GENE-999477 Length:1472 Species:Xenopus tropicalis


Alignment Length:585 Identity:120/585 - (20%)
Similarity:198/585 - (33%) Gaps:199/585 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LFHARRIIDMEIKARRQAEHE-RDAMESKIMAVADLLRHERNLNNE---------------TRDK 118
            ||.....|...||..|:.|.. .:.:|||             |||:               |:.:
 Frog   990 LFQNEPNIAAPIKFTRELEETVMNTLESK-------------LNNKVPPPLKPKPPIPYEITKPE 1041

  Fly   119 LAFLHTLPSSRKRKSLNAVR-------EDKSYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWRE 176
            |::|.|......||||.::.       :...|.:               ..|..:..|..:   |
 Frog  1042 LSYLDTGARDGHRKSLTSINWPPLEAFDPSDYAE---------------PMDSVVKPRNQE---E 1088

  Fly   177 HRPSLP----KNQIPSVGNKRSRLSTGL-NGSMSG---------------TTPT--------TGK 213
            :..|:|    :.:|.::.|.....|.|. |||.|.               |.|.        .||
 Frog  1089 NIYSVPHDSTQGKIITIRNTNKPQSNGSGNGSDSDMDTNSLERARKASIVTKPVLYRTKCAKLGK 1153

  Fly   214 --SRRSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNERIGDGLS 276
              |.|||:.:|.:.....:.:..|           :.|....:.:||..|..        .||  
 Frog  1154 FSSYRSSLSVGSDDEPGPIRRKEE-----------ETGTQGTKGDSTTNSYE--------ADG-- 1197

  Fly   277 STPR-RSVLK--EATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQCQKR 338
            ..|| |::|:  ..|...:.|                :.||.:...|:....|            
 Frog  1198 EDPRKRNILRSLRRTTKKVKP----------------KPRPSLTKATWESNYF------------ 1234

  Fly   339 IRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVN 403
                                             |.|    ::..||...|     ||..|..||.
 Frog  1235 ---------------------------------GFP----LSSVVTSERP-----IPVFIEKCVE 1257

  Fly   404 EIEA--RGLTEVGLYRLSSSEREYKALKEQFLRGKATPH---LGNTDIYV--LCCCVKDFLRSLT 461
            .|||  .|:|..|:||:|.::.|.::|:.||    ...|   |...|..|  :...:|.|...|.
 Frog  1258 YIEATGEGMTTEGIYRVSGNKSEMESLQRQF----DQDHNLDLAEKDFTVNTVAGALKSFFSELP 1318

  Fly   462 EPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIAQ-CPVVLMPID 525
            :||:|.:...:...|.:..|.:.....:...:|:.|:.|.:...::|.|..|::| ..:.||..:
 Frog  1319 DPLVPYNMQAELVEAYKINDLEHKLQAMKDLLKKFPKENHEIFKYVISHLNRVSQHHHINLMTSE 1383

  Fly   526 NISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLELPVSFWEQYIVID------PTRTPAT 584
            |:|:.|.||::   .||.......|...|.:.:::..::....|:.|.:.:|      |:..|.|
 Frog  1384 NLSICFWPTLM---RPDFTTMDALTATRTYQTIIELFIQQCPFFFYQRLPVDLPIPSSPSTPPLT 1445

  Fly   585  584
             Frog  1446  1445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 2/47 (4%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 51/196 (26%)
arhgap35XP_004917008.1 Ras_like_GTPase 29..245 CDD:206648
Ras <158..247 CDD:395024
RhoGAP-FF1 261..340 CDD:406821
FF 429..>470 CDD:128718
FF 485..538 CDD:128718
pseudoGTPaseD_p190RhoGAP 589..760 CDD:425412
PHA03151 1036..1225 CDD:177546 46/243 (19%)
RhoGAP_p190 1234..1420 CDD:239838 54/246 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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