DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and arhgap12

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_004915509.1 Gene:arhgap12 / 100493129 XenbaseID:XB-GENE-961971 Length:824 Species:Xenopus tropicalis


Alignment Length:606 Identity:128/606 - (21%)
Similarity:220/606 - (36%) Gaps:177/606 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 YHEKC------------AGYAAE------TARIQNELDKSLTKMGDLEGKLFHARRIIDMEIKAR 84
            ||..|            .|::.|      |..|.::.::...|..|.:|:.::            
 Frog   307 YHSTCDNQSDSQYGSPPRGWSEELDQHGHTTFINDQTNEKWIKHVDDQGRPYY------------ 359

  Fly    85 RQAEHERDAME-SKIMAVADLLRH---ERNLNNETRDKLAFLHTLPSSRKRKSLNAVREDKSYGD 145
            ..|:..|...| .|..|....||.   .|:|:.:.:|.:.|     :..:..::.....||    
 Frog   360 YSADGSRSEWELPKYNATLQPLREITKSRSLDRKLQDPIVF-----TKWRHSTILLDTNDK---- 415

  Fly   146 INSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGL--NGS----- 203
                     |.|.|...|            |..|..||.|:.........|.|.:  ||.     
 Frog   416 ---------DSSATSKPD------------ETSPPSPKQQVTDQEKYGVLLVTKITENGKKVRKN 459

  Fly   204 -MSGTTPTTGKS---RRSSVG--IGVEQ----HTVDVGQGAERFCATTKVTIPQDGQGVIRAEST 258
             ||..|...|.:   :.::.|  .|..|    .|||:...:..:.:..|    ...:.||..::|
 Frog   460 WMSSWTVLKGTTLLLQANAAGWKFGGNQSKPEFTVDIKGASVDWASKDK----SSKKNVIELKTT 520

  Fly   259 IESLPVIAGNERIGDGLSSTPRRSVLKE---------ATAP-----------PLTPVNAMAPHVV 303
                   :|.|.:....|.|    |:|:         .|.|           |.:||:   .|..
 Frog   521 -------SGTELLIQSDSDT----VIKDWYTAFCNTTGTTPGDLEEACEDNVPESPVD---KHGK 571

  Fly   304 AESGTPLQH-RPLMRNHTFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSC 367
            .:......| |...:|.:|.....:  ||..|.:.:.:..                 ::|     
 Frog   572 EKFDKEKDHDRDSKKNRSFKPANSI--DNAEQKKTKTKLK-----------------KFL----- 612

  Fly   368 VPQTGTPTTKTM--TGYVTD--FAPSIAPM-------IPALIVHCVNEIEARGLTEVGLYRLSSS 421
               |..||.:.:  .||:.|  |..|:|.:       :|..:..|:..:|.:||...||||:|.:
 Frog   613 ---TRRPTMQAVREKGYIKDPVFGSSLASLCQRENTTVPNFVKMCIEHVEEQGLDVDGLYRVSGN 674

  Fly   422 EREYKALKEQFLRGKATPH-----LGNT---DIYVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQ 478
            ....:.|:      .|..|     |.::   ||:|:...:|.|.|.|.|||...|.:.||.||::
 Frog   675 LAVIQKLR------FAVTHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFSHFNDFVNAIK 733

  Fly   479 NPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIAQC-PVVLMPIDNISLIFGPTIVGYSTPD 542
            . :.|.....:...:||||:.|.||:..|..|.:::.:. ....|...:::::||||::   .|:
 Frog   734 Q-EPKLRVQAIKDLIKQLPKPNHDTMQALFKHLKKVVETGEKNRMTYQSLAIVFGPTLL---KPE 794

  Fly   543 PDQHAIYTEVFTQKQVMKALL 563
            .:...|......|.|:::.:|
 Frog   795 SETGNIAIHTVYQNQIVELIL 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 5/47 (11%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 55/201 (27%)
arhgap12XP_004915509.1 SH3 <26..72 CDD:388381
SH3-WW_linker 69..249 CDD:374675
WW 255..282 CDD:238122
WW 347..372 CDD:366073 6/36 (17%)
PH_ARHGAP9-like 439..545 CDD:270053 24/120 (20%)
RhoGAP_ARHGAP27_15_12_9 632..817 CDD:239868 52/194 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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