DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and arhgap28

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_002938100.2 Gene:arhgap28 / 100488165 XenbaseID:XB-GENE-1013085 Length:661 Species:Xenopus tropicalis


Alignment Length:550 Identity:114/550 - (20%)
Similarity:180/550 - (32%) Gaps:185/550 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 DINSTGSLLSDLSITHS---------EDDFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGL 200
            :|..:||::  |:..||         |..|:            |.:|.:|.|.:   |...|..:
 Frog     2 EIKDSGSVV--LTGYHSYTPSSSPIKEQSFV------------PDMPSSQSPMI---RKTSSRKI 49

  Fly   201 NGSMSGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKV-TIPQDGQ-------------G 251
            |..:|..:..|.:..||     :.:.::|.....:.:|....: ...:|||             |
 Frog    50 NRMLSNESLHTPQFNRS-----ISESSMDNSSMEDFWCEVNNIKESSEDGQDDSLLMEVKPADEG 109

  Fly   252 VIRAE----STIESLPVIAG-NERIGDGLSSTPRR----SVLKEATAPPLT-------------- 293
            .:.||    :.:.:|  |:| .|..|..|.||..|    :|.|..|....|              
 Frog   110 DLEAEWLQDAGLSNL--ISGTQEHDGQALLSTLTRTQAAAVQKRYTTYTQTMRKKNKHTVRDVRD 172

  Fly   294 --PVNAMAPHVVAESGTPL-----QH-------RPLMRNH------------------TFSQKTF 326
              .:|...|....::.:|:     ||       :|:..|.                  :||:...
 Frog   173 IFGINDSTPSFEPKTLSPIPSNGVQHMIKKPIWKPVTNNSCTLEKPSPSVAEELSFEASFSETVA 237

  Fly   327 LRG-DNCVQCQKRI---------------RFG--AVGLRCRDCPVRCHIDCRYLLTVSCVPQT-- 371
            :.| |...:..:||               |||  .||    |..:......|||   |.:..|  
 Frog   238 VDGKDKESEKNQRIKKDDSALPKFIVWKSRFGLTEVG----DLSLEDMKKIRYL---SLIELTAF 295

  Fly   372 ------------------------GTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEIEARGLTE 412
                                    |.|.|..:......|.   ...:|.:....:..:|..||..
 Frog   296 YDALGIELKRNRIVRIKGKENGLFGVPLTTLLESDQKKFP---GTKVPLIFQKLLQRLEETGLET 357

  Fly   413 VGLYRLSSSEREYKALKEQFLRGKATPH--------LGNTDIYVLCCCVKDFLRSLTEPLIPTSQ 469
            .|:.|:..|....|.|:|:.   :|..|        :.|.|...|   :|.|:|.|..||.....
 Frog   358 EGILRVPGSAARVKNLREEL---EAKFHDNSFDWNKVRNNDAAGL---LKMFIRELPSPLFTMEY 416

  Fly   470 WKDFANAVQN-PDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQR--IAQCPVVLMPIDNISLIF 531
            ...|...|:. ...|.....|...:..||.||||| |..:|:|.:  ::......|.:.|:|:|.
 Frog   417 LPAFITLVEKISKIKLQLQALHLLIMLLPDANRDT-AKALLNFLKKVVSNEEKNKMSLWNVSMIL 480

  Fly   532 GPTIVGYSTPDPDQHAIYTEVFTQKQVMKA 561
            .|.:.           |.....|.|:.|||
 Frog   481 APNLF-----------ICKRKSTNKEEMKA 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 15/83 (18%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 46/191 (24%)
arhgap28XP_002938100.2 RhoGAP_ARHGAP18 318..529 CDD:239856 49/202 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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