DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6553 and LRP3

DIOPT Version :10

Sequence 1:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_005259002.1 Gene:LRP3 / 4037 HGNCID:6695 Length:785 Species:Homo sapiens


Alignment Length:132 Identity:39/132 - (29%)
Similarity:54/132 - (40%) Gaps:21/132 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 CL------GSQNATSCGHRCGGGDCIQLDQLCDGSANCLDGSDETVAMCEKVWCPGYAFRCSYGA 81
            ||      || ::.|.|...|...|....|.|||..:|..|.||.....    ||...:.|..|:
Human   368 CLPWEQPCGS-SSDSDGGSLGDQGCFSEPQRCDGWWHCASGRDEQGCPA----CPPDQYPCEGGS 427

  Fly    82 --CIASTAVCDGVQDCVDGSDEQGWLCRAQMQQANCDNWEMYCSSGQCMTYSKLCDGIRDCRDGD 144
              |......|:..:.|.||:||:...        :|.....:|.:..|:..:..|||..||:||.
Human   428 GLCYTPADRCNNQKSCPDGADEKNCF--------SCQPGTFHCGTNLCIFETWRCDGQEDCQDGS 484

  Fly   145 DE 146
            ||
Human   485 DE 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6553NP_610911.1 LDLa 34..60 CDD:197566 8/25 (32%)
LDLa 70..101 CDD:197566 9/32 (28%)
LDLa 115..146 CDD:197566 10/30 (33%)
LRP3XP_005259002.1 CUB 43..156 CDD:238001
LDLa 166..200 CDD:238060
LDLa 212..249 CDD:238060
CUB 254..364 CDD:238001
LDLa 416..452 CDD:238060 11/35 (31%)
LDLa 455..489 CDD:238060 12/32 (38%)
PHA03247 <527..772 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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