DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6553 and Culd

DIOPT Version :10

Sequence 1:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_729364.1 Gene:Culd / 38946 FlyBaseID:FBgn0035880 Length:965 Species:Drosophila melanogaster


Alignment Length:173 Identity:45/173 - (26%)
Similarity:63/173 - (36%) Gaps:54/173 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFGAHQNLSIQLVIFLSLAVTICLGSQNATSCGHRCGGGDCIQLDQLCDGSANCLDGSDETVAMC 65
            :||....|:|...:|..|  ...:||:      ..||...||.:...|||..:|.|||||..: |
  Fly   419 VFGMSSKLAIVYSVFNYL--NCYIGSE------FLCGNNHCISIRLHCDGFDHCGDGSDEPDS-C 474

  Fly    66 EKVWC------------PGYAF---------RCSYGACIASTAVCDGVQDCVDGSDEQGWL---- 105
            |:.|.            |.|.|         :.:.|..|.||....||.        .||:    
  Fly   475 EEDWAHLHHDRRWYSHKPNYYFPKIDQYPDLKTATGIFIISTLGIFGVL--------SGWMVILY 531

  Fly   106 ---CRAQMQQANCDNWEMYCSSGQCMTYSKLCDGIRDCRDGDD 145
               .||:.|:      |:   .....|.|:|.|...:.|..|:
  Fly   532 RMGVRARHQR------EL---QSHLQTISELLDRQDEDRTPDE 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6553NP_610911.1 LDLa 34..60 CDD:197566 11/25 (44%)
LDLa 70..101 CDD:197566 9/51 (18%)
LDLa 115..146 CDD:197566 7/31 (23%)
CuldNP_729364.1 CUB 200..298 CDD:238001
LDLa 442..472 CDD:238060 14/35 (40%)
Blue background indicates that the domain is not in the aligned region.

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