Protein Alignment CG6553 and cue

DIOPT Version :10

• Sequence 1: NP_610911.1
• Gene: CG6553 / 36537
• FlyBaseID: FBgn0033880
• Length: 319
• Species: Drosophila melanogaster
• Sequence 2: NP_612113.2
• Gene: cue / 38174
• FlyBaseID: FBgn0011204
• Length: 644
• Species: Drosophila melanogaster
• Alignment Length: 313
• Identity: 51/313 - (16%)
• Similarity: 90/313 - (28%)
• Gaps: 123/313 - (39%)

  Fly    19 AVTICL------GSQ-NATSCGHRCGGGDCIQLDQLCDGSANCLDGSDETVAMCEKVWC-PGY-A 74
            |..:|:      ||: ....|.:.|..|.| |:.:|.                ..|.:| ||: .
  Fly   382 ATDLCICPTGFKGSRCEIRECHNYCVHGTC-QMSELA----------------YPKCYCQPGFKG 429

  Fly    75 FRCSYGACIASTAVCDGVQDCVDGSDEQGWLCRAQMQQANCDNWEMYCSSGQCMTYSKLCDGIRD 139
            .||       ..:||.|:  |::|..     ||....:....:.|.....|          |.|
  Fly   430 ERC-------ELSVCSGL--CLNGGH-----CRVSKDENEAPSCECPAKFG----------GAR- 469

  Fly   140 CRDGDDELESL-CEGVTIPTTTVSSTTSTTTESSIHRITPTVPVTRKASRPNPLQENG-ECVVPQ 202
            |.....|:.|| |..:.                  |.....||....:......|:|. ...:||
  Fly   470 CEQNSTEICSLFCRLLK------------------HEPEMYVPFGCHSICEELAQDNSTNIAIPQ 516

  Fly   203 LPNVMVKHFTDAILTVGSRVANGTRIYYDCPAEHRLKGENQNICQDALWARKFPYCETPQAYVFS 267
            ..::.|                                                 |.||:.:..|
  Fly   517 YQHLEV-------------------------------------------------CLTPRVWTSS 532

  Fly   268 LVIVIFCFLI---VVLVFLIWRVRRENGSRRQREEHIWLVETSSNLPQTSSIP 317
            ::|::...::   :::..::..:||....:|.|....::|...:........|
  Fly   533 VIIILVVGIVSSLLLVAVIVQGIRRLYKPKRPRIRKTFVVRKQARTNSAGDTP 585

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG6553	NP_610911.1	LDLa	34..60	CDD:197566	5/25 (20%)
		LDLa	70..101	CDD:197566	10/32 (31%)
		LDLa	115..146	CDD:197566	5/30 (17%)
cue	NP_612113.2	TerD_like	48..>85	CDD:473128
		YvrE	<73..>164	CDD:442613
		LY	101..141	CDD:214531
		Ldl_recept_b	167..208	CDD:459654
		LY	193..237	CDD:214531