DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6553 and Lrp6

DIOPT Version :10

Sequence 1:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001388749.1 Gene:Lrp6 / 312781 RGDID:1304749 Length:1613 Species:Rattus norvegicus


Alignment Length:249 Identity:67/249 - (26%)
Similarity:87/249 - (34%) Gaps:101/249 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QNATSCGH---------RC--GGGDCIQLDQLCDGSANCLDGSDETVAMCEKVWCPGYAFRCSYG 80
            |:..|||.         .|  |..|||.:...|||...|.|.|||  ..|..  |....|:|:.|
  Rat  1238 QDELSCGEPPTCSPQQFTCFTGDIDCIPVAWRCDGFTECEDHSDE--LNCPV--CSESQFQCASG 1298

  Fly    81 ACIASTAVCDGVQDCVDGSDEQGWLCRAQMQQANCDNW----EMYCSSGQCMTYSKLCDGIRDCR 141
            .||.....|:|..:|.|.|||:           ||:..    :..|::|||:...|.||...||.
  Rat  1299 QCIDGALRCNGDANCQDKSDEK-----------NCEVLCLIDQFRCANGQCVGKHKKCDHNVDCS 1352

  Fly   142 DGDDELESLCEGVTIPTTTVSSTTSTTTESSIHRITPTVPVTRKASRPNPLQENGECVVPQLPNV 206
            |..|||:  |    .||                                      |...||..| 
  Rat  1353 DRSDELD--C----YPT--------------------------------------EEPAPQATN- 1372

  Fly   207 MVKHFTDAILTVGSRV-------ANGTRIYYD-----CPAEHRLKGENQNICQD 248
                      ||||.:       .:|| ||:.     ||   |:||:.:.:..|
  Rat  1373 ----------TVGSVIGVIVTIFVSGT-IYFICQRMLCP---RMKGDGETMTND 1412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6553NP_610911.1 LDLa 34..60 CDD:197566 11/36 (31%)
LDLa 70..101 CDD:197566 11/30 (37%)
LDLa 115..146 CDD:197566 11/34 (32%)
Lrp6NP_001388749.1 YncE 1..204 CDD:442618
LY 89..127 CDD:214531
Ldl_recept_b 150..191 CDD:459654
LY 175..216 CDD:214531
LY 217..251 CDD:214531
FXa_inhibition 286..323 CDD:464251
LY 353..393 CDD:214531
LY 397..437 CDD:214531
Ldl_recept_b 458..499 CDD:459654
LY 483..524 CDD:214531
LY 525..558 CDD:214531
FXa_inhibition 592..627 CDD:464251
YncE <654..813 CDD:442618
LY 697..739 CDD:214531
LY 827..866 CDD:214531
FXa_inhibition 893..929 CDD:464251
LY 958..998 CDD:214531
YncE <968..1075 CDD:442618
LY 1094..1136 CDD:214531
FXa_inhibition 1207..1243 CDD:464251 1/4 (25%)
LDLa 1249..1285 CDD:238060 13/37 (35%)
LDLa 1288..1322 CDD:238060 13/44 (30%)
LDLa 1326..1360 CDD:238060 13/35 (37%)
Blue background indicates that the domain is not in the aligned region.

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