DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6553 and Lrp5

DIOPT Version :10

Sequence 1:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001424443.1 Gene:Lrp5 / 293649 RGDID:1309329 Length:1615 Species:Rattus norvegicus


Alignment Length:156 Identity:56/156 - (35%)
Similarity:67/156 - (42%) Gaps:34/156 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QNATSCGH---------RCGGG--DCIQLDQLCDGSANCLDGSDETVAMCEKVWCPGYAFRCSYG 80
            ||..:||.         .|..|  |||.....|||...|.|.|||.....    |....|.|:.|
  Rat  1248 QNLLTCGEPPTCSPDQFACATGEIDCIPGAWRCDGFPECADQSDEEGCPV----CSASQFPCARG 1308

  Fly    81 ACIASTAVCDGVQDCVDGSDEQGWLCRAQMQQANCD-----NWEMYCSSGQCMTYSKLCDGIRDC 140
            .|:.....|||..||.|||||           ||||     | :..|:||||:...:.||...||
  Rat  1309 QCVDLRLRCDGEADCQDGSDE-----------ANCDAVCLPN-QFRCASGQCVLIKQQCDSFPDC 1361

  Fly   141 RDGDDELESLCEGVTIPTTTVSSTTS 166
            .||.|||  :||....|:..|.:.:|
  Rat  1362 ADGSDEL--MCEINKPPSDDVPAHSS 1385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6553NP_610911.1 LDLa 34..60 CDD:197566 11/36 (31%)
LDLa 70..101 CDD:197566 13/30 (43%)
LDLa 115..146 CDD:197566 14/35 (40%)
Lrp5NP_001424443.1 None

Return to query results.
Submit another query.