DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6553 and Vldlr

DIOPT Version :10

Sequence 1:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_037287.2 Gene:Vldlr / 25696 RGDID:3963 Length:873 Species:Rattus norvegicus


Alignment Length:354 Identity:92/354 - (25%)
Similarity:126/354 - (35%) Gaps:124/354 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GAHQ-NLSIQLVIFLSLAVTIC--------LGSQNATSCGH-------------RCGGGDCIQLD 45
            |||: ..|....|.||   .:|        ...::...||.             :||.|:||...
  Rat   194 GAHEFQCSTSSCIPLS---WVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGECIHKK 255

  Fly    46 QLCDGSANCLDGSDETVAMCEKVWCPGYAFRCSYGACIASTAVCDGVQDCVDGSDEQGWLCRAQM 110
            ..|||..:|.|||||  ..|....|....|.|..|:||..:..|:|::||||||||         
  Rat   256 WRCDGDPDCKDGSDE--VNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDE--------- 309

  Fly   111 QQANCDN-------WEMYCSSGQCMTYSKLCDGIRDCRDGDDELESLCEGVTIPTTTVSSTTSTT 168
              .||.|       .:..|.||:|:..:|:||..:||||..||                      
  Rat   310 --VNCKNVNQCLGPGKFKCRSGECIDITKVCDQEQDCRDWSDE---------------------- 350

  Fly   169 TESSIHRITPTVPVTRKASRPNPLQENGECVVPQLPNVMVKHFTDAILTVG--SRVANGTRIYY- 230
                                  ||:   ||           |..:.::..|  |.:.....|.| 
  Rat   351 ----------------------PLK---EC-----------HINECLVNNGGCSHICKDLVIGYE 379

  Fly   231 -DCPAEHRL----------KGENQNICQDALWARKFPY-CETPQAYVFSLVIVIFCFLIVVLVFL 283
             ||.|...|          :.:|..||.......|..| ||..:.|...|...: |..:.....|
  Rat   380 CDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGV-CKAVGKEPSL 443

  Fly   284 IWRVRRENGSRR---QREEHIWLVETSSN 309
            |:..||:  .|:   :|:|:|.|||...|
  Rat   444 IFTNRRD--IRKIGLERKEYIQLVEQLRN 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6553NP_610911.1 LDLa 34..60 CDD:197566 12/38 (32%)
LDLa 70..101 CDD:197566 14/30 (47%)
LDLa 115..146 CDD:197566 13/37 (35%)
VldlrNP_037287.2 LDLa 33..67 CDD:238060
LDLa 71..103 CDD:197566
Ldl_recept_a 111..149 CDD:395011
Ldl_recept_a 153..188 CDD:395011
LDLa 192..224 CDD:197566 8/32 (25%)
Ldl_recept_a 237..273 CDD:395011 14/37 (38%)
Ldl_recept_a 276..312 CDD:395011 16/46 (35%)
Ldl_recept_a 320..350 CDD:395011 11/29 (38%)
FXa_inhibition 360..394 CDD:464251 8/33 (24%)
EGF_CA 396..426 CDD:214542 7/29 (24%)
LDL-receptor class B 1 439..480 12/34 (35%)
LY 461..499 CDD:214531 5/10 (50%)
LDL-receptor class B 2 481..524
Ldl_recept_b 481..522 CDD:459654
LDL-receptor class B 3 525..567
Ldl_recept_b 527..565 CDD:459654
LDL-receptor class B 4 568..611
Ldl_recept_b 568..608 CDD:459654
LY 592..634 CDD:214531
LDL-receptor class B 5 612..654
LDL-receptor class B 6 655..697
Ldl_recept_b 655..695 CDD:459654
FXa_inhibition 706..749 CDD:464251
Clustered O-linked oligosaccharides 751..790
Endocytosis signal. /evidence=ECO:0000255 832..837
Blue background indicates that the domain is not in the aligned region.

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