DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6553 and lrp-2

DIOPT Version :10

Sequence 1:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_491270.2 Gene:lrp-2 / 171981 WormBaseID:WBGene00003072 Length:4858 Species:Caenorhabditis elegans


Alignment Length:62 Identity:14/62 - (22%)
Similarity:24/62 - (38%) Gaps:16/62 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ITLEVEPSDTIEN-VKAKIQDKEGI--PPD---QQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
            :::..:..|..:| :.|.|.....|  |..   |::..|.|.||.          |..:||:
 Worm    74 LSIIFDSQDDFDNDITASIDFSSSIQFPASDQLQEQFDFTGIQLH----------QPPNTLY 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6553NP_610911.1 LDLa 34..60 CDD:197566 7/30 (23%)
LDLa 70..101 CDD:197566
LDLa 115..146 CDD:197566
lrp-2NP_491270.2 LDLa 80..119 CDD:197566 11/48 (23%)
LDLa 130..162 CDD:197566
LY 668..702 CDD:214531
LY 707..758 CDD:214531
LY 759..801 CDD:214531
LDLa 968..1000 CDD:197566
LDLa 1013..1047 CDD:238060
LDLa 1053..1087 CDD:238060
LDLa 1098..1129 CDD:238060
LDLa 1144..1175 CDD:238060
LDLa 1182..1216 CDD:238060
LDLa 1227..1261 CDD:197566
FXa_inhibition 1276..1305 CDD:464251
FXa_inhibition 1314..1344 CDD:464251
LY 1421..1463 CDD:214531
LY 1465..1508 CDD:214531
LY 1521..1555 CDD:214531
FXa_inhibition 2270..2309 CDD:464251
YvrE 2360..>2531 CDD:442613
LY 2480..2521 CDD:214531
LDLa 2681..2715 CDD:238060
LDLa 2717..2751 CDD:238060
LDLa <2774..2798 CDD:238060
LDLa 2819..2851 CDD:238060
LDLa 2856..2891 CDD:238060
LDLa 2904..2938 CDD:238060
LDLa 2988..3020 CDD:197566
LY 3231..3270 CDD:214531
Ldl_recept_b 3296..3336 CDD:459654
LY 3319..3362 CDD:214531
LY 3363..3404 CDD:214531
LDLa 3481..3514 CDD:197566
LDLa 3527..3564 CDD:197566
LDLa 3574..3609 CDD:238060
LDLa 3614..3649 CDD:197566
LDLa 3659..3693 CDD:238060
LDLa 3881..3912 CDD:238060
LY 4084..4125 CDD:214531
LY 4139..4181 CDD:214531
Blue background indicates that the domain is not in the aligned region.

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