DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syngr and Syngr2

DIOPT Version :9

Sequence 1:NP_610908.1 Gene:Syngr / 36533 FlyBaseID:FBgn0033876 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_446005.2 Gene:Syngr2 / 89815 RGDID:621334 Length:224 Species:Rattus norvegicus


Alignment Length:231 Identity:83/231 - (35%)
Similarity:125/231 - (54%) Gaps:18/231 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGWTEKDGKE--YCLYNGDGMAC 76
            ||||...|||:||...:..:||||.|.:..:.:::||.||..||:......:  :|::|.:..||
  Rat     4 GAYGAANAGGSFDLRRYVSQPQVVTRLVSMVLALIVFSCIFGEGYINLHSSDQLHCVFNRNEDAC 68

  Fly    77 KYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSS 141
            :||:.:||..||||..|:..:..|.::|:...||..|:.|:.|||||||::||.|.:|.:||:::
  Rat    69 RYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 133

  Fly   142 APPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAF---ETDPANVVHQQAY 203
            .|..:.:||.|.:.||.|..|||.||.:.|.:||:|:..|. |.|...:   ..||..     ||
  Rat   134 KPDDVLVGADSARAAITFSFFSIFSWGVLASLAYQRYKAGV-DAFIQNYVDPTPDPTT-----AY 192

  Fly   204 GYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQP 239
            ........:.|...||.|    .:|..:.   ||.|
  Rat   193 ASYPSASVENYQQPPFTQ----NVETTEG---YQPP 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyngrNP_610908.1 MARVEL 34..169 CDD:307448 55/136 (40%)
Syngr2NP_446005.2 MARVEL 20..165 CDD:366555 56/144 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351783
Domainoid 1 1.000 121 1.000 Domainoid score I5551
eggNOG 1 0.900 - - E1_KOG4016
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I4077
OMA 1 1.010 - - QHG45451
OrthoDB 1 1.010 - - D1549362at2759
OrthoFinder 1 1.000 - - FOG0001420
OrthoInspector 1 1.000 - - otm44885
orthoMCL 1 0.900 - - OOG6_104437
Panther 1 1.100 - - LDO PTHR10838
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X989
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.810

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