DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syngr and syngr3b

DIOPT Version :9

Sequence 1:NP_610908.1 Gene:Syngr / 36533 FlyBaseID:FBgn0033876 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001307420.1 Gene:syngr3b / 570094 ZFINID:ZDB-GENE-070822-6 Length:233 Species:Danio rerio


Alignment Length:201 Identity:80/201 - (39%)
Similarity:121/201 - (60%) Gaps:13/201 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 INNGGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGWTEKDGKE--YCLYNGD 72
            ::..|::|.|:||.|||.:.|..:||.::|||.|:||:|||..|.:||:... |.|  :|::|.:
Zfish     1 MDGAGSFGAGRAGSAFDLVAFVKQPQTILRALAWIFSMVVFASIINEGYVNM-GSERLHCVFNKN 64

  Fly    73 GMACKYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQ 137
            ..||.|...:|:..||||:.|:..:..|.::||||.|||.|:.::.||..|||::||.|.:|.:|
Zfish    65 ADACNYAITIGIMAFLASVLFLALDVYFPQISSVKDRKRAVLLEIAFSGFWTFLWFVGFCFLANQ 129

  Fly   138 WS--SSAPPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAG-DEFTS-------AFET 192
            ||  |....||...:.:.:.||.|..|||::||...:.|.:|||:|.. ..|||       ..:|
Zfish   130 WSRTSDKELPLEQASDAARAAIAFSFFSILTWAGLTVCAVQRFLLGTDMTLFTSEQVVNQPPKQT 194

  Fly   193 DPANVV 198
            .|:|.|
Zfish   195 YPSNDV 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyngrNP_610908.1 MARVEL 34..169 CDD:307448 58/138 (42%)
syngr3bNP_001307420.1 MARVEL 21..166 CDD:279608 60/145 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593613
Domainoid 1 1.000 124 1.000 Domainoid score I5443
eggNOG 1 0.900 - - E1_KOG4016
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 164 1.000 Inparanoid score I4175
OMA 1 1.010 - - QHG45451
OrthoDB 1 1.010 - - D1549362at2759
OrthoFinder 1 1.000 - - FOG0001420
OrthoInspector 1 1.000 - - otm25361
orthoMCL 1 0.900 - - OOG6_104437
Panther 1 1.100 - - O PTHR10838
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X989
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.770

Return to query results.
Submit another query.