DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syngr and syngr2b

DIOPT Version :9

Sequence 1:NP_610908.1 Gene:Syngr / 36533 FlyBaseID:FBgn0033876 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001076327.1 Gene:syngr2b / 568509 ZFINID:ZDB-GENE-070424-19 Length:235 Species:Danio rerio


Alignment Length:238 Identity:80/238 - (33%)
Similarity:115/238 - (48%) Gaps:20/238 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 AYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGWTEK--DGKEYCLYNGDGMACK 77
            |||...||..||.:.|..:||.|:|.|.|:|::|||..|::||:...  :.:..|::|.:..||.
Zfish     7 AYGASLAGAGFDLVKFIKQPQTVVRFLSWVFAIVVFSSITAEGYVNSTDEAEVRCVFNRNDGACH 71

  Fly    78 YGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSA 142
            ||..:||..|||.:||:..:.:...:|:.:.||..||||:.||..|||::||.|.....|||.::
Zfish    72 YGVGIGVIAFLACVGFLLADAILPLISNAQERKYIVMADLAFSGCWTFLWFVCFCLTADQWSKTS 136

  Fly   143 PPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDP--------ANVVH 199
            ... ||...::...|.|..|||.||......|..||..|. :|.|.:: |||        .:...
Zfish   137 DRS-GIPTDAVHAVIAFSFFSIASWGALTYFAVVRFRQGV-EEVTQSY-TDPPPDLSSPYPSTYT 198

  Fly   200 QQAYGYSMDNDNDQYSASPF-GQPQQGGMEQQQSGMEYQQPTY 241
            ...|....:...|.|...|| ..|...|.      ..:|.|.|
Zfish   199 PPTYPSFQNTGADIYQQPPFTPNPDPSGQ------TSFQPPVY 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyngrNP_610908.1 MARVEL 34..169 CDD:307448 53/136 (39%)
syngr2bNP_001076327.1 MARVEL 22..166 CDD:279608 54/144 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593612
Domainoid 1 1.000 124 1.000 Domainoid score I5443
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45451
OrthoDB 1 1.010 - - D1549362at2759
OrthoFinder 1 1.000 - - FOG0001420
OrthoInspector 1 1.000 - - otm25361
orthoMCL 1 0.900 - - OOG6_104437
Panther 1 1.100 - - O PTHR10838
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X989
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.860

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