DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Syngr and syngr1

DIOPT Version :9

Sequence 1:	NP_610908.1	Gene:	Syngr / 36533	FlyBaseID:	FBgn0033876	Length:	241	Species:	Drosophila melanogaster
Sequence 2:	NP_001016195.1	Gene:	syngr1 / 548949	XenbaseID:	XB-GENE-494921	Length:	231	Species:	Xenopus tropicalis

Alignment Length:	231	Identity:	92/231 - (39%)
Similarity:	131/231 - (56%)	Gaps:	23/231 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly    13 GGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGW--TEKDGKEYCLYNGDGMA 75
            |||||.|||||||||.||..:|..|:|.:.|:||:||||||.:||:  ...:.:|:|::|.:..|
Frog     3 GGAYGAGKAGGAFDPQTFVRQPHTVLRMVSWVFSIVVFGCIINEGYINASTEAEEHCIFNRNSSA 67

  Fly    76 CKYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSS 140
            |.||..|||..||..:.::..:..|.::||||.||:.|::|:..|.||.|.:||.|.:|.:||..
Frog    68 CAYGVTVGVLAFLTCLLYLAVDVYFPQISSVKDRKKTVISDIAVSGLWAFFWFVGFCFLANQWQV 132

  Fly   141 SAP--PPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQQAY 203
            |.|  .|:..||.:.:.||.|..|||.:||..|::||:|:.:|:.            :.:..|.|
Frog   133 SNPNDNPMNEGADAARAAIAFSFFSIFTWAGQAVLAYQRYRLGSD------------SALFSQDY 185

  Fly   204 GYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQP 239
               ||...||  ..|:  |.....|.......||||
Frog   186 ---MDPSQDQ--GPPY--PPYASNEDLDPSAGYQQP 214

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Syngr	NP_610908.1	MARVEL	34..169	CDD:307448	57/138 (41%)
syngr1	NP_001016195.1	MARVEL	20..167	CDD:366555	60/146 (41%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H3456
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1549362at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R2805
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.040