DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syngr and syngr2

DIOPT Version :9

Sequence 1:NP_610908.1 Gene:Syngr / 36533 FlyBaseID:FBgn0033876 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001006785.1 Gene:syngr2 / 448480 XenbaseID:XB-GENE-1005721 Length:219 Species:Xenopus tropicalis


Alignment Length:228 Identity:81/228 - (35%)
Similarity:126/228 - (55%) Gaps:17/228 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGWTE--KDGKEYCLYNGDGMAC 76
            ||||..||||:|....|..:|:.::|.:..:|:::||.||.|:|:|.  .:.|..|::|.:..||
 Frog     4 GAYGAPKAGGSFSLENFLKRPETILRIISCIFALIVFACIVSDGYTNIPNESKLTCIFNKNNDAC 68

  Fly    77 KYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSS 141
            .||..:|...|||.:.|:..:...:.:|:...||..|:||:|||.||:|::||.|.:|.:||:.|
 Frog    69 HYGVGIGFLAFLACILFLFLDIYLQTLSNANYRKYIVLADLGFSTLWSFLWFVGFCFLANQWAVS 133

  Fly   142 APPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQQAYGYS 206
            ....:..|..:.:.||.|..|||:||...|::||||:..||  :|...: .||.    |.:|...
 Frog   134 TTDGILTGEDNARAAIAFSFFSIISWIPLAVLAYKRYKQGA--DFNPDY-VDPT----QDSYPSY 191

  Fly   207 MDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQP 239
            ....:|.|.:.||...::.|        |||.|
 Frog   192 PTGASDNYQSPPFTNSREAG--------EYQPP 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyngrNP_610908.1 MARVEL 34..169 CDD:307448 50/136 (37%)
syngr2NP_001006785.1 MARVEL 20..165 CDD:366555 52/144 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1549362at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.