DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syngr and Syngr3

DIOPT Version :9

Sequence 1:NP_610908.1 Gene:Syngr / 36533 FlyBaseID:FBgn0033876 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001100455.2 Gene:Syngr3 / 302975 RGDID:1311801 Length:229 Species:Rattus norvegicus


Alignment Length:236 Identity:89/236 - (37%)
Similarity:141/236 - (59%) Gaps:16/236 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGWTEKD-GKEY-CLYNGDGMA 75
            |.::|.|:||.||||::||.:||.::|.:.|:||:.|||.|.:||:...| |.|. |::||:..|
  Rat     3 GASFGAGRAGAAFDPVSFAQRPQTLLRVVSWVFSIAVFGPIVNEGYVNSDSGPELRCVFNGNAGA 67

  Fly    76 CKYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSS 140
            |::|.::|:..|:|.:.|:..:..|:::|||:.|:|.|:.|:|||.:|:|::||.|.:|.:||..
  Rat    68 CRFGVVLGLGAFIACVAFLLLDVRFQQISSVRDRRRAVLLDLGFSGVWSFLWFVGFCFLTNQWQR 132

  Fly   141 SAPPPLGIGAG-SMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQQAY- 203
            :||.|....|| :.:.||.|..|||:||....:.|.:||.:|..   .|.|.||.......||| 
  Rat   133 TAPGPGTAQAGDAARAAIAFSFFSILSWVALTVKALQRFRLGTD---MSLFATDQLGTGAAQAYP 194

  Fly   204 GYSMDN---DNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY 241
            ||.:.:   ..:.|.:.||.:.    ::....|  ||.|.|
  Rat   195 GYPVGSGVEGTETYQSPPFTET----LDTSPKG--YQVPAY 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyngrNP_610908.1 MARVEL 34..169 CDD:307448 57/137 (42%)
Syngr3NP_001100455.2 MARVEL 23..165 CDD:366555 57/141 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351784
Domainoid 1 1.000 121 1.000 Domainoid score I5551
eggNOG 1 0.900 - - E1_KOG4016
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I4077
OMA 1 1.010 - - QHG45451
OrthoDB 1 1.010 - - D1549362at2759
OrthoFinder 1 1.000 - - FOG0001420
OrthoInspector 1 1.000 - - otm44885
orthoMCL 1 0.900 - - OOG6_104437
Panther 1 1.100 - - O PTHR10838
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X989
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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