DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Syngr and syngr3

DIOPT Version :9

Sequence 1:	NP_610908.1	Gene:	Syngr / 36533	FlyBaseID:	FBgn0033876	Length:	241	Species:	Drosophila melanogaster
Sequence 2:	XP_002932489.1	Gene:	syngr3 / 100489723	XenbaseID:	XB-GENE-949635	Length:	227	Species:	Xenopus tropicalis

Alignment Length:	239	Identity:	90/239 - (37%)
Similarity:	133/239 - (55%)	Gaps:	24/239 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    13 GGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVFGCISSEGWTEKDGKE-YCLYNGDGMAC 76
            |.::|.|:|||.|:|:.|..:||.::|.:.|:||:||||.:.:||....|..| ||:||.:..||
Frog     3 GASFGAGRAGGGFEPVEFLKQPQTILRIISWVFSIVVFGSLVNEGSINVDSPELYCVYNQNDDAC 67

  Fly    77 KYGNMVGVFGFLASMGFMGGEFLFERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQW--- 138
            .|...:||..|.||:.|...:..|.::||||.||:.||.|:||||:|:|::||:|.:|..||
Frog    68 NYAITIGVVAFFASICFFVVDIYFPQISSVKDRKKAVMIDIGFSAIWSFLWFVSFCFLADQWRKT 132

  Fly   139 SSSAPPPLGIGAGSMKTAIWFCLFSIVSWALCALMAYKRFLIG------AGDEFTSAFETDPANV 197
            |...|.    ||.:.:..|.|..||:.||...|:.|.:|:.:|      |||:|.||    |...
Frog   133 SYDVPQ----GADAARAGIVFSFFSVFSWCASAVKAMQRYRLGTDMSLFAGDQFGSA----PNAG 189

  Fly   198 VHQQAYGYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY 241
            ......|..:::..|.|.:.||.:    .|:....|  ||.|:|
Frog   190 YPGYPTGSGIESTTDTYQSPPFTE----NMDSSTKG--YQVPSY 227

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Syngr	NP_610908.1	MARVEL	34..169	CDD:307448	59/138 (43%)
syngr3	XP_002932489.1	MARVEL	20..162	CDD:366555	60/145 (41%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	120	1.000	Domainoid score	I5686
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	158	1.000	Inparanoid score	I4161
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1549362at2759
OrthoFinder	1	1.000	-	-		FOG0001420
OrthoInspector	1	1.000	-	-		otm47928
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R2805
SonicParanoid	1	1.000	-	-		X989
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	8.090