DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stj and Cacna2d2

DIOPT Version :9

Sequence 1:NP_001246303.1 Gene:stj / 36526 FlyBaseID:FBgn0261041 Length:1271 Species:Drosophila melanogaster
Sequence 2:XP_017168985.1 Gene:Cacna2d2 / 56808 MGIID:1929813 Length:1160 Species:Mus musculus


Alignment Length:1335 Identity:343/1335 - (25%)
Similarity:559/1335 - (41%) Gaps:325/1335 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLSVLVCLAPCVNLQPAENINYNLVHS---WADKLGMELFHLGDFITRRKEVQESFKDAK----V 73
            ||...:.|.|.:....|...::...|:   ||.:|..|:..:.......::::|.:||.:    |
Mouse    46 LLLPPLLLLPLLTAPGASAYSFPQQHTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFEV 110

  Fly    74 VSRNGASIVDSMAKEIEMMMDLKVSAVRRIMDTAENTALSH--QNDMADKMFSYYSAKEMLEPGD 136
            .......:|:.:|.:||.::|.||.|::|:.|.|||...:|  |:::.::...||.||...|..|
Mouse   111 QENEPQKLVEKVAGDIESLLDRKVQALKRLADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDD 175

  Fly   137 PVPPIPTPAPDMD---KDIGEPLIYVQPKVVVLEPRPEFHNTPVNFSVSSVHVPVNVFDRAPDVI 198
            |      .:.||:   |.....|.:::.        |.|.| .||:|.::|.:|.:::..:..::
Mouse   176 P------ESEDMERGSKTSALRLDFIED--------PNFKN-KVNYSYTAVQIPTDIYKGSTVIL 225

  Fly   199 KAIQWSENLDQIFRDNYKNDPTLSWQFFGSSTGFMRQFPASKWRKDVPVDLYDCRLRSWYMEAAT 263
            ..:.|:|.|:.:|.:|.:.||||.||.|||:||..|.:||:.||....:||||.|.|.||::.|:
Mouse   226 NELNWTEALENVFIENRRQDPTLLWQVFGSATGVTRYYPATPWRAPKKIDLYDVRRRPWYIQGAS 290

  Fly   264 SPKDIVILMDGSGSMLGQRLDIAKHVVNTILDTLGTNDFVNIFTFDKEVSPVVPCFEDTLIQANL 328
            ||||:||::|.|||:.|..|.:.|..|..:||||..:|:||:.:|:::..| |.||.. |:|||:
Mouse   291 SPKDMVIIVDVSGSVSGLTLKLMKTSVCEMLDTLSDDDYVNVASFNEKAQP-VSCFTH-LVQANV 353

  Fly   329 GNIRELKEGIELFRPKSIANYTAALTKAFELLEETKLSSRGAQCNQAIMIIGDGAPENNREVFEL 393
            .|.:..||.::....|....|.|....||:.|:.:.::.  |.||:.||:..||..:..::|||.
Mouse   354 RNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQLQNSNITR--ANCNKMIMMFTDGGEDRVQDVFEK 416

  Fly   394 HNWRDPPYKPVRVFTYLIGKEVANWD--DIRWMACENQGYYVHLSDTAEVREMVLNYIPVMARPL 456
            :||   |.:.|||||:.:|:.  |:|  .::||||.|:|||..:.....:|.....|:.|:.||:
Mouse   417 YNW---PNRTVRVFTFSVGQH--NYDVTPLQWMACTNKGYYFEIPSIGAIRINTQEYLDVLGRPM 476

  Fly   457 VL-GRHDHPVIWSQVYADIEDTKLSDYLWDINQCEYQKADVLEYWQVHDRMLEPSEMHRRKYRRM 520
            || |:....|.|:.||.|.....|                                         
Mouse   477 VLAGKDAKQVQWTNVYEDALGLGL----------------------------------------- 500

  Fly   521 KETWNQPVDSNVYQFMTTVSMPIYDRRENALINLTTDINPAAKINLQVTRIANILGVAGTDVPIN 585
                           :.|.::|::        |||.| .|..|.| |:     ||||.|.||.:|
Mouse   501 ---------------VVTGTLPVF--------NLTQD-GPGEKKN-QL-----ILGVMGIDVALN 535

  Fly   586 EIKKLLSPFTLGVNGYAFIVTNNGYVLFHPDFRP-IFQGYILKPAYNSVDMIEVELLDDDRPARD 649
            :||:|...:|||.|||.|.:..|||||.||:.:| :.|....:... ::|.::.||.|:::.   
Mouse   536 DIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQVSQTTNFREPV-TLDFLDAELEDENKE--- 596

  Fly   650 FNPVLMTIRDSIINQSTGSKWM--LVKNHFDEMKRVARVKRQYYWTAIKKTPFTLVISYPEQYGV 712
                  .||.|:|:...|.|.:  |||: .|| :.:..|.|.|.|..|:.|.::|.:..| .|..
Mouse   597 ------EIRRSMIDGDKGHKQIRTLVKS-LDE-RYIDEVIRNYTWVPIRSTNYSLGLVLP-PYST 652

  Fly   713 SHMDIRADQEIHRISIKGTNLRS--------------VFSGKRWKIHPDWLFCKHSNRTFKTPEI 763
            .::......:|.::.:..:.|:.              ||...|       .:||..|.:....|.
Mouse   653 YYLQANLSDQILQVKLPISKLKDFEFLLPSSFESEGHVFIAPR-------EYCKDLNASDNNTEF 710

  Fly   764 ELLYFLERMSEPGWRWPGSRSAMPPEHAAAMFSNNSSTGRYPSINEKESYYCDRQLMQALVFDAR 828
             |..|:|.|.:           :.|                      :|..|:..|:..|:.|..
Mouse   711 -LKNFIELMEK-----------VTP----------------------DSKQCNNFLLHNLILDTG 741

  Fly   829 VTGWFSNNTSFNSKDDKGTSASSPIAVLMGLLPRNEFKQRFGVTVAFLATHSGLTRWHEFHSNAA 893
            :|                       ..|:..:.|::....:.:...|.||..|:||  .|.:.||
Mouse   742 IT-----------------------QQLVERVWRDQDLNTYSLLAVFAATDGGITR--VFPNKAA 781

  Fly   894 EESGVGETFSQNNTRAIDEIWYKRAVDQHFVREESFVYSVPFDAG------ESNSEILVTASHAV 952
            |:       ...|....:..:|:|::|.|     .:::..|....      ..|..:.|..|.||
Mouse   782 ED-------WTENPEPFNASFYRRSLDNH-----GYIFKPPHQDSLLRPLELENDTVGVLVSTAV 834

  Fly   953 FHNEGGKTAPAAVVGFQFQHSALYKLFHNITGNA-------------------CAVDDKD--CYI 996
            ..:.|.:|...||||.:....|..:.|..:..|.                   |.|:::|  |.:
Mouse   835 ELSLGRRTLRPAVVGVKLDLEAWAEKFKVLASNRTHQDQPQKQCGPSSHCEMDCEVNNEDLLCVL 899

  Fly   997 LDNNGYVIISTRVH---ETGRFFGEVNGAIMKRLLEENVYRQVTVYDYQAVCFESKNDNNASS-- 1056
            :|:.|::::|.:.|   :.||||.||:..:|..|...:.|.:...|||||.|......|..::  
Mouse   900 IDDGGFLVLSNQNHQWDQVGRFFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAPR 964

  Fly  1057 -MLLSPLFHLLRVGKWLLHTALWYIVQLLQWAPGVSSHYADMYGDSNDTEPPPPEPHPDHHARNG 1120
             :.:..:...|.:. |....|.|.:.|.|.        |..:|......:|...|..|:      
Mouse   965 GVFVPTIADFLNLA-WWTSAAAWSLFQQLL--------YGLIYHSWFQADPAEAEGSPE------ 1014

  Fly  1121 NGHGKKDDDHWLRYLTLHRTRLKPCDMKRDLYTLFNEKDNVVYN--MTAHACERPFVVLPIPFSN 1183
                               ||...|.||:..|  :....|..||  :....|.|.|....:..:|
Mouse  1015 -------------------TRESSCVMKQTQY--YFGSVNASYNAIIDCGNCSRLFHAQRLTNTN 1058

  Fly  1184 LILLVIDQ----------------LCPRDGSVVLTVNPQPIDYHLSVNDSLACYKQAREFNRMRP 1232
            |:.:|.::                .||.||       |:            .|....|...|..|
Mouse  1059 LLFVVAEKPLCSQCEAGRLLQKETHCPADG-------PE------------QCELVQRPRYRRGP 1104

  Fly  1233 HSCISRHANESGIKLCGKACSVYANLGLLLLCHIL 1267
            |.|...:|.|. ...||:..|...:||:|:...:|
Mouse  1105 HICFDYNATED-TSDCGRGASFPPSLGVLVSLQLL 1138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stjNP_001246303.1 VWA_N 107..241 CDD:285584 43/138 (31%)
vWA_VGCC_like 253..439 CDD:238740 73/187 (39%)
Cache_1 524..619 CDD:280839 35/94 (37%)
Cacna2d2XP_017168985.1 VWA_N 144..268 CDD:369855 43/138 (31%)
vWA_VGCC_like 280..459 CDD:238740 73/187 (39%)
HK_sensor 536..648 CDD:365792 41/123 (33%)
VGCC_alpha2 675..1120 CDD:369894 113/578 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832113
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2353
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000496
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10166
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X365
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.840

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