DRSC/TRiP Functional Genomics Resources

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Protein Alignment fand and prp-6

DIOPT Version :10

Sequence 1:NP_610891.1 Gene:fand / 36514 FlyBaseID:FBgn0033859 Length:883 Species:Drosophila melanogaster
Sequence 2:NP_507525.1 Gene:prp-6 / 180180 WormBaseID:WBGene00013343 Length:968 Species:Caenorhabditis elegans


Alignment Length:756 Identity:155/756 - (20%)
Similarity:258/756 - (34%) Gaps:239/756 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 ILRNA-----YSVKHWLRYIDHKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIP 85
            |:.||     :||:.|.:..|.:....:.  ..|..:||:::|.|.|:|...:...         
 Worm   387 IVANAVRSCPHSVRLWCKASDLEQDLKDK--KKVLRKALEQIPSSVKLWKAAVELE--------- 440

  Fly    86 TDPMYEEVNSAFERALVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPLY 150
             ||  |:......||:........:|:......|.:    ..|.|.::|...:|..:|  ||   
 Worm   441 -DP--EDARILLTRAVECCSSSTEMWLALARLETYE----NARKVLNKAREHIPTDRH--IW--- 493

  Fly   151 LQFVRRFEMPETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQLAHIVDNEHFVSKHGKSN 215
                      .:|.|:         |:|....|.:   |::  .|:.::.:..|:..:      |
 Worm   494 ----------LSAARL---------EETRGQKDMV---DKI--VAKAMSSLKVNQVEI------N 528

  Fly   216 HQLWNELCDLISKNPHKVHSLNVDAIIRG--GLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYE 278
            ...|  |.|.:.....|. .:...||||.  ||....:.....|.:.|:.:.:...|...|.:|.
 Worm   529 RDQW--LKDAVDAEMAKC-PITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFTCVRTVYA 590

  Fly   279 EAIQTVTTVRDFTQVFDEYAQFEELSLNRRMEQVAANEAATEEDDIDVELRLSRFEYLMERRLLL 343
            .|::..:..|   .::|....||.                 |...:|            |...:|
 Worm   591 IALKEFSRKR---SIWDAAIHFER-----------------EHGSLD------------EHEAIL 623

  Fly   344 LNSVLLRQNPHNVHEWHKRVTLYEDKPAEIISTYTEAVQTVQPKQAVGKLHTLWVEFAKFYEANG 408
            |                                  :|.:||.      ::...|:..||....|.
 Worm   624 L----------------------------------KACETVP------EVEDYWLMLAKLRFVNK 648

  Fly   409 QVEDAR----VVFER-GTEVEYVKVEDLAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKIAY 468
            :|.:||    ..||: |.:.|        .:|....::|:...||:.|..|..:|.|...     
 Worm   649 RVGEARDTLMSAFEKHGHQSE--------KIWLAATKIEIETDQFDTARGLFGKARAKAP----- 700

  Fly   469 YDDTETVQARLHRSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEHNYF 533
                         |.:||...|..|...|..:..|.:.|..|.......:|.:..|..||:.|..
 Worm   701 -------------SARVWMKNAHFEWCLGNVEEAKRLCEECIQKYDDFHKIYLVLGQVLEQMNDV 752

  Fly   534 EEAYRAYEKGISLFKWPNVYDIWNSYLTKFLERYG-----GTKLERAR-------DL------FE 580
            ..|..||.:||.  |.|.|..:| ..|.:..|:.|     ...||:||       ||      ||
 Worm   753 HGARLAYTQGIR--KCPGVIPLW-ILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLESVRFE 814

  Fly   581 QCLDQCPPEHAKYFY-----------LLYAK---LEEEHGLARHAMSVYDRATSAVKEDEMFDMY 631
            |.:. | ||.||...           .|:|:   :|..||  |.|.|:     .|:|:.|    :
 Worm   815 QRVG-C-PEMAKERMSRALQECEGSGKLWAEAIWMEGPHG--RRAKSI-----DALKKCE----H 866

  Fly   632 NIFIK-KAAEIY----GLPRTREIYEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIYAHCS 691
            |..:. .||.::    .:.:.||.:.:|:...|:..  .....|...|...|:.:..::::..| 
 Worm   867 NPHVLIAAARLFWSERKIKKAREWFVRAVNLDPDNG--DAFANFLAFEQIHGKEEDRKSVFKKC- 928

  Fly   692 QVCDPRITADFWQT-------WKEFEVRHGNEDTMREMLRI 725
            ...:||. .|.||:       |:.         |..|:|::
 Worm   929 VTSEPRY-GDLWQSVSKDPINWRR---------TTEEILQL 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fandNP_610891.1 Spy 55..>206 CDD:443119 28/150 (19%)
LapB <246..458 CDD:442196 36/216 (17%)
Spy 429..>597 CDD:443119 48/196 (24%)
TPR repeat 432..460 CDD:276809 7/27 (26%)
TPR repeat 482..512 CDD:276809 9/29 (31%)
TPR repeat 517..545 CDD:276809 9/27 (33%)
TPR repeat 553..584 CDD:276809 13/48 (27%)
TPR repeat 591..618 CDD:276809 10/40 (25%)
prp-6NP_507525.1 PLN02217 <3..73 CDD:215130
PRP1_N 22..182 CDD:461908
LapB 315..507 CDD:442196 32/161 (20%)
TPR repeat 399..424 CDD:276809 5/26 (19%)
TPR repeat 429..455 CDD:276809 8/37 (22%)
TPR repeat 460..484 CDD:276809 5/27 (19%)
TPR repeat 490..518 CDD:276809 10/56 (18%)
LapB 569..833 CDD:442196 77/366 (21%)
TPR repeat 670..697 CDD:276809 7/26 (27%)
TPR repeat 702..730 CDD:276809 7/27 (26%)
TPR repeat 735..765 CDD:276809 10/31 (32%)
TPR repeat 770..796 CDD:276809 6/26 (23%)
TPR repeat 804..832 CDD:276809 10/29 (34%)
TadD <852..933 CDD:444034 18/94 (19%)
TPR repeat 867..897 CDD:276809 6/29 (21%)
TPR repeat 902..929 CDD:276809 4/29 (14%)
Blue background indicates that the domain is not in the aligned region.

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