DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13334 and Mdh1b

DIOPT Version :10

Sequence 1:NP_610888.2 Gene:CG13334 / 36510 FlyBaseID:FBgn0033856 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_036010132.1 Gene:Mdh1b / 76668 MGIID:1923918 Length:501 Species:Mus musculus


Alignment Length:295 Identity:60/295 - (20%)
Similarity:101/295 - (34%) Gaps:94/295 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 SVKSCFAKSMRPMKEFKRPRISK-----ISVVGAGQVGTAISAMLLLR---NLTKNLVILDINYE 84
            |::||. :|..|:.......|.|     :.|:..|:....:...||::   |:..|::.:.:..|
Mouse   224 SLESCL-RSRVPLCRLYGYLIEKNAHKSVKVIVGGKNFVNLKTTLLMQYAPNIASNIIAVALGVE 287

  Fly    85 -LAKAE-ALDFQHASAFLSDARVVPCGDSTNSKDSDV------VIITAGARPSGKDRSRLAAMQK 141
             .|||. |...:..||.:.|  |:..|:.|.:...|:      ...:|...|.|...|.|:.:..
Mouse   288 GQAKAVLARKMKTTSANIKD--VIIWGNITGNNYVDLRKAKVYNYESAVKGPPGHYHSVLSLIFD 350

  Fly   142 TVEILKKAVPKLVELSPNATFIIISNPADVMTYAVQRITNLPKHRCFTTGCHLDTVRFRNLIANR 206
            ...|.|:.|..|..||                               :||.....:...:.||..
Mouse   351 REWITKEFVQTLKILS-------------------------------STGKQFGGILAAHSIATT 384

  Fly   207 LRL-----PPSQVHGYVIGEHGASAVP--------------VW------SSVSIAGIRLN----D 242
            |:.     ||.::....:...|...:|              .|      ..:|::...|:    |
Mouse   385 LKYWYHGSPPGEIVSLGVMSEGQFDIPEGIVFSMPVKFENGTWVVLTDLEDISLSEKTLSRLTGD 449

  Fly   243 VV--KNLACGD---------DPENWAKINKQVTTG 266
            ::  |.:||||         ||    |.|:...||
Mouse   450 LIQEKLVACGDLLTFQPIEEDP----KDNEPSNTG 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13334NP_610888.2 LDH_1 46..358 CDD:133429 55/277 (20%)
Mdh1bXP_036010132.1 Rossmann-fold NAD(P)(+)-binding proteins 9..459 CDD:473865 51/268 (19%)

Return to query results.
Submit another query.