DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13334 and LDHB

DIOPT Version :10

Sequence 1:NP_610888.2 Gene:CG13334 / 36510 FlyBaseID:FBgn0033856 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_006719137.1 Gene:LDHB / 3945 HGNCID:6541 Length:353 Species:Homo sapiens


Alignment Length:259 Identity:103/259 - (39%)
Similarity:165/259 - (63%) Gaps:1/259 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SKISVVGAGQVGTAISAMLLLRNLTKNLVILDINYELAKAEALDFQHASAFLSDARVVPCGDSTN 113
            :||:|||.||||.|.:..:|.::|...|.::|:..:..|.|.:|.||.|.||...::|...|.:.
Human    22 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV 86

  Fly   114 SKDSDVVIITAGARPSGKDRSRLAAMQKTVEILKKAVPKLVELSPNATFIIISNPADVMTYAVQR 178
            :.:|.:|::|||.|.. :..|||..:|:.|.:.|..:|::|:.||:...|::|||.|::||...:
Human    87 TANSKIVVVTAGVRQQ-EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWK 150

  Fly   179 ITNLPKHRCFTTGCHLDTVRFRNLIANRLRLPPSQVHGYVIGEHGASAVPVWSSVSIAGIRLNDV 243
            ::.|||||...:||:||:.|||.|:|.:|.:.||..||:::||||.|:|.|||.|::||:.|.::
Human   151 LSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQEL 215

  Fly   244 VKNLACGDDPENWAKINKQVTTGGLAVAKTKGYTNWAIALTCADIVQAMSGGKGKIACVGTDMK 307
            ...:...:|.|||.:::|.|......|.|.||||||||.|:.||::::|.....:|..|.|.:|
Human   216 NPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVK 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13334NP_610888.2 LDH_1 46..358 CDD:133429 103/259 (40%)
LDHBXP_006719137.1 LDH_1 20..279 CDD:133429 102/257 (40%)

Return to query results.
Submit another query.