DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13334 and Ldhal6b

DIOPT Version :10

Sequence 1:NP_610888.2 Gene:CG13334 / 36510 FlyBaseID:FBgn0033856 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_899163.1 Gene:Ldhal6b / 369018 RGDID:727955 Length:382 Species:Rattus norvegicus


Alignment Length:355 Identity:131/355 - (36%)
Similarity:209/355 - (58%) Gaps:8/355 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PIQLIRLNMPHFRAKTWNTKAMST-KSVKSCFAKSMRPMKEFKRPRISKISVVGAGQVGTAISAM 66
            |.|::|  :|..|| .|:....|| .:||   .|.::.:...:....:|:|::|.|.||.|.:..
  Rat    30 PSQVLR--VPPNRA-WWSLTPTSTMATVK---GKLLQHVSSEEPVLHNKVSIIGTGSVGMACAIS 88

  Fly    67 LLLRNLTKNLVILDINYELAKAEALDFQHASAFLSDARVVPCGDSTNSKDSDVVIITAGARPSGK 131
            ::.:.||..|.::|.|....|.|.:|.||.|.|:....:|...|...:.:|:||:||||||.. |
  Rat    89 IIAKGLTDELALVDSNEGKMKGETMDLQHGSVFMKMPNIVCSKDFHVTANSEVVVITAGARQE-K 152

  Fly   132 DRSRLAAMQKTVEILKKAVPKLVELSPNATFIIISNPADVMTYAVQRITNLPKHRCFTTGCHLDT 196
            |.:||..:|:.|.|.|.....:|:.||....||:|||.|::||...:::..||:|...:||:|||
  Rat   153 DETRLNLVQRNVSIFKIMFANIVKYSPRCKIIIVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDT 217

  Fly   197 VRFRNLIANRLRLPPSQVHGYVIGEHGASAVPVWSSVSIAGIRLNDVVKNLACGDDPENWAKINK 261
            .|||.::..||.:.....||:|:||||.|:|||||.|:|||:.|.::...:....|||.|..::|
  Rat   218 ARFRYMLGQRLGIHSESCHGWVLGEHGDSSVPVWSGVNIAGVPLKELNSAIGTNKDPEQWGNVHK 282

  Fly   262 QVTTGGLAVAKTKGYTNWAIALTCADIVQAMSGGKGKIACVGTDMKGLNGIQDNVVLSLPCLVTA 326
            :|......:.|.||||:|||.|:.|||.:::.....|...|.|.:|||.||::.|.||:||::..
  Rat   283 EVIASAYKIIKMKGYTSWAIGLSVADIAESILKNLRKTHPVSTKIKGLYGIKEEVFLSVPCVLGE 347

  Fly   327 GGISHVFELPLTDVEQSKLLASANILLEAQ 356
            .|||.:.::.|:..|:::::.||:.:.:.|
  Rat   348 NGISDIIKVKLSPTEEAQMVKSADTIWKIQ 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13334NP_610888.2 LDH_1 46..358 CDD:133429 119/311 (38%)
Ldhal6bNP_899163.1 LDH_1 70..379 CDD:133429 119/309 (39%)

Return to query results.
Submit another query.