DRSC/TRiP Functional Genomics Resources

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Protein Alignment Roe1 and C34C12.8

DIOPT Version :9

Sequence 1:NP_610886.2 Gene:Roe1 / 36508 FlyBaseID:FBgn0014877 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_497713.1 Gene:C34C12.8 / 175449 WormBaseID:WBGene00007927 Length:237 Species:Caenorhabditis elegans


Alignment Length:216 Identity:90/216 - (41%)
Similarity:122/216 - (56%) Gaps:29/216 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 TSQNMSALRLYSTEKQPEEATEQK---------------------ATESSPEVEK-----LTKEL 62
            |.:|:...|..:|..|..|....:                     |.|...::.|     |.||.
 Worm    19 TQKNLRIQRFSATASQSSEEVNYEIRKDGKRLRGADYEEIVLTSIAGEDKTQIPKGAFDVLLKEY 83

  Fly    63 AAAKEQNAELMDKYKRSLADSENMRNRLNKQISDAKIFGIQSFCKDLLEVADTLGHATQAV-PKD 126
            ...:.::.:..|||:||||::||:|.|..||..|||:|.|||||||||||:|.|..|.::| |:|
 Worm    84 DDLQAESLDFKDKYQRSLAETENVRRRGIKQTDDAKVFAIQSFCKDLLEVSDILDIAVKSVKPED 148

  Fly   127 KLSGNADLKNLYEGLTMTRASLLQVFKRHGLEPLDPINQKFDPNQHEALFQ-KEDKTVEPNTVVE 190
            ..||...||:|:||::|||..:.:.|.:|||..:||.|:|||||.|||:|| ......:|...:|
 Worm   149 LESGGKALKDLFEGVSMTRTVMAKTFAKHGLVTVDPTNEKFDPNLHEAVFQIPSANAKQPVGHIE 213

  Fly   191 V-TKLGYKLHERCIRPALVGV 210
            | ||:||.|.||.||||.|||
 Worm   214 VCTKIGYSLKERPIRPAQVGV 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Roe1NP_610886.2 GrpE 70..210 CDD:271355 76/142 (54%)
2-helical coiled coil 70..120 CDD:271355 30/49 (61%)
2-helical coiled coil 140..155 CDD:271355 5/14 (36%)
C34C12.8NP_497713.1 GrpE 92..234 CDD:271355 76/141 (54%)
2-helical coiled coil 92..141 CDD:271355 30/48 (63%)
2-helical coiled coil 162..177 CDD:271355 5/14 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159736
Domainoid 1 1.000 147 1.000 Domainoid score I2781
eggNOG 1 0.900 - - E1_COG0576
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6992
Inparanoid 1 1.050 148 1.000 Inparanoid score I2995
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG61230
OrthoDB 1 1.010 - - D1525208at2759
OrthoFinder 1 1.000 - - FOG0001525
OrthoInspector 1 1.000 - - oto19953
orthoMCL 1 0.900 - - OOG6_100642
Panther 1 1.100 - - LDO PTHR21237
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R526
SonicParanoid 1 1.000 - - X1249
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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