DRSC/TRiP Functional Genomics Resources

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Protein Alignment mip120 and lin54

DIOPT Version :9

Sequence 1:NP_001163143.1 Gene:mip120 / 36499 FlyBaseID:FBgn0033846 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_001070035.1 Gene:lin54 / 560688 ZFINID:ZDB-GENE-060929-440 Length:771 Species:Danio rerio


Alignment Length:810 Identity:239/810 - (29%)
Similarity:355/810 - (43%) Gaps:205/810 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 TSPSLAQPNKIQV-VRTADGKIIKI---NQAGPSLLVNAKQGTGTT----VTPGGSAATSVK--- 304
            |.|..:.|...|| :.|...:||.|   ..:..::..|||..|.:|    :||..|::|:.|   
Zfish    32 TPPPQSAPESAQVPMETEVPEIISICPTTASMQAISTNAKSTTSSTTQLLLTPSSSSSTTTKNAT 96

  Fly   305 --------LS-PSTGNVVLNKPVGQVVVRTETPVKTATGSVASASATPGKMLVQSGGKQILV--- 357
                    || |....:::||                   ||:...:||..:::..|:::||   
Zfish    97 PTLPKIPSLSVPPNHQLIINK-------------------VAADGKSPGGAVIKQEGQKLLVAGL 142

  Fly   358 --SNKNIIKLSPNASATSSTTHTTGGQTPSTSSGLHAIQLPGKGGIQYVRVLNNNKSAAGTSATA 420
              :.:.|:...|:|....:|:..: |...|..:.:..:...||..|..        |:|.....:
Zfish   143 SKTGQPIMLALPHAWNKPATSQGS-GDAKSQPTQIKMVTAMGKPVIAV--------SSASQLVAS 198

  Fly   421 SIP------KTVQTQKITVVRPPAATGVP------ATSTTTSAAAASPAAASKANLAMGNTNKIV 473
            |.|      ||:|..|    :||.:|..|      .|....:...:||.:.|..     .|.::|
Zfish   199 STPLQAQHLKTLQITK----KPPVSTAGPMITKLIITKALNNKVLSSPGSVSPV-----VTGRVV 254

  Fly   474 MRS----------MGGSIVPLPSVQTLVSKRALGAISNASK---PASAASSSATPSASQELPRKH 525
            .:|          :|.:|..:|......||.|:..:.:.||   .:..:.||.:|..|..||...
Zfish   255 SQSTPLTPPRTIAIGETISTVPQNAATNSKVAISPLKSPSKLTVVSVTSQSSNSPQKSMTLPLNV 319

  Fly   526 RLTDLNVQLKQSASVSSEASDSSDAGPEAKKPRYVITMQQGSQKAA--------SQPVQ------ 576
            .|....:.::|||..|...:.||.:..:..||...:|:.....|..        .|.:|      
Zfish   320 ALGQQILTVQQSAVTSPAKAGSSQSTTQTVKPVQTVTVPTSQFKTIIPLTTPPNVQQIQVPGSRF 384

  Fly   577 ---KLINRT---ANVQRVVSSSTSPSSNSTKKIYNYVQPTGSNGAKYMICNSGVPQSSTSAMRRG 635
               :|:..|   :.||...|::|:||          :||     ||.::.|:.|           
Zfish   385 HYVRLVTATTGSSTVQTGGSTNTNPS----------IQP-----AKPVMMNAAV----------- 423

  Fly   636 YTGYVENKTRRPPPISPQQHRFKQMGPQQQSKHQQLQAQAKQRIRQQQLPTEQSTPI----KVEP 696
                     |...||.|.| ..||:.|:..|       .|.|.:...|.|.....|.    :::|
Zfish   424 ---------RMSVPIVPAQ-TAKQVVPKPLS-------SAAQVVTTSQTPQRLIMPATHLPQIQP 471

  Fly   697 KLPTLPPGV-------KANV-----PAKPLFEVLKP------------PATAAAAGAVDPLGGMT 737
            .|..||||.       ..||     ||..:.::.:|            .||.:.|.|...|.|::
Zfish   472 NLTNLPPGTVLAPAHGSGNVGYAVLPAPYVTQIPQPAFVTLTSSSTFSTATPSQAQARLSLNGLS 536

  Fly   738 SR------RKHCNCSKSQCLKLYCDCFANGEFCQDCTCKDCFNNLDYEVERERAIRSCLDRNPSA 796
            :.      ||.|||::|||||||||||||||||.:|.|.:||||||:|.||.:||::||||||.|
Zfish   537 TSEANSRPRKPCNCTRSQCLKLYCDCFANGEFCNNCNCVNCFNNLDHESERLKAIKACLDRNPVA 601

  Fly   797 FKPKITAPNSGDM-RLHNKGCNCKRSGCLKNYCECYEAKIPCSSICKCVGCRNMEDRPD-VDMDS 859
            |||||.....|:. |.|:||||||:|||||||||||||||.|||||||:||:|.|:.|: ..:..
Zfish   602 FKPKIGKGKEGESDRRHSKGCNCKKSGCLKNYCECYEAKIMCSSICKCMGCKNFEESPERKTLMH 666

  Fly   860 LDGLMGVEGQKKDKAKNKQLNENRANI------------------YFTDDVIEATIMCMISRIVM 906
            |.....|..|::..||.| |:...:::                  :.|.:|.|||..|::.:...
Zfish   667 LADAAEVRVQQQTAAKTK-LSSQISDLLTRTTPAITSGGGKLPYTFVTKEVAEATCDCLLEQAEQ 730

  Fly   907 HEKQNVAVEDMEREVMEEMGESLTQIIAFA 936
            .|..|......||.::||.|..|.:||:||
Zfish   731 AELTNQPQAMAERLILEEFGRCLHRIISFA 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mip120NP_001163143.1 TCR 740..775 CDD:281618 26/34 (76%)
TCR 813..850 CDD:281618 31/36 (86%)
lin54NP_001070035.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..44 3/11 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..105 10/36 (28%)
TCR 545..>566 CDD:281618 17/20 (85%)
DNA-binding. /evidence=ECO:0000250|UniProtKB:Q6MZP7 546..559 9/12 (75%)
Linker. /evidence=ECO:0000250|UniProtKB:Q6MZP7 606..619 3/12 (25%)
TCR 619..654 CDD:281618 30/34 (88%)
DNA-binding. /evidence=ECO:0000250|UniProtKB:Q6MZP7 622..635 11/12 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I8446
eggNOG 1 0.900 - - E1_KOG1171
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 255 1.000 Inparanoid score I3159
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003047
OrthoInspector 1 1.000 - - otm25881
orthoMCL 1 0.900 - - OOG6_106892
Panther 1 1.100 - - LDO PTHR12446
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2613
SonicParanoid 1 1.000 - - X1765
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.850

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