DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mip120 and Lin54

DIOPT Version :9

Sequence 1:NP_001163143.1 Gene:mip120 / 36499 FlyBaseID:FBgn0033846 Length:952 Species:Drosophila melanogaster
Sequence 2:XP_006250719.1 Gene:Lin54 / 305171 RGDID:1311361 Length:767 Species:Rattus norvegicus


Alignment Length:990 Identity:267/990 - (26%)
Similarity:378/990 - (38%) Gaps:315/990 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LTDSLDDTEPLPELSFEDFLEPTSEKSSQHMEIEALDSEEDNIGGEDLADPAND------SLNTP 67
            |.|.:.||  ...|..||.:|.....|...||.|..:....|..|:..|.|.:.      |.:|.
  Rat    30 LPDDIMDT--AITLVDEDSIEAVIVSSPIPMETELEEIVSINSTGDSTATPISTEPITVYSNHTN 92

  Fly    68 QFKKNVVHILEDKRLNSSGLTVLKSHAIKMVTAGGTPPAKAQVTDVKILNKLKPIPSSTLKIGST 132
            |...|......|     |..||..:....:...|...|.......: ||||:.  .:|.||:|:.
  Rat    93 QVAVNTTVSKAD-----SNTTVKPAFPSGLQKLGAQTPVTISANQI-ILNKVS--QTSDLKLGNQ 149

  Fly   133 TIATKSTPGSITKTLGNLTQIRTKDGQVIFVQKSVPGTQSSTA--VTGSPSGGIRRLVAPSGIQK 195
            |:........:| |||       |.|..|.:  ::|.:|...|  ||.....|..:| .|..|  
  Rat   150 TLKPDGQKLILT-TLG-------KSGSPIVL--ALPHSQLPQAQKVTAQAQPGDAKL-PPQQI-- 201

  Fly   196 AVLSKGVTMASTGLVKAAVPAKASTSVPGSAITLKGIQPLAGGTAKASTSSTTATTSPSLAQPNK 260
                |.||:.....||.|:...|.|  |||.:                   ...||.||:.|..:
  Rat   202 ----KVVTIGGRPEVKPAIGVSALT--PGSQL-------------------INTTTQPSVLQTQQ 241

  Fly   261 IQVVRTA-------DGKII-KINQAGPSLLVNAKQGTGTTVTPGGSAATSVKLSPS--TGNVVLN 315
            ::.|:.|       .|.:| |:..|.|   :|:|..||.|          .:.||.  ||.|:..
  Rat   242 LKTVQIAKKPRTPTSGPVITKLIFAKP---INSKAVTGQT----------TQASPPVVTGRVLSQ 293

  Fly   316 KPVGQVVVRTETPVKTAT--------GSVASASATPGKMLVQSGGKQILVSNKNIIKLSPNASAT 372
            ...|       ||.||.|        .::.|.:.||.|:.:..            :| |||.:..
  Rat   294 SAPG-------TPSKTITISESGVIGSTLNSTTQTPNKIAISP------------LK-SPNKTVK 338

  Fly   373 SST-THTTGGQTPS---------TSSGLHAIQLPGKGGIQYVRVLNNNKSAAGTSATASIPKTVQ 427
            |:. |.|.||.:.|         .:..:..||:|| ....|||::      ..|:|.:|.|...|
  Rat   339 SAVQTITVGGMSTSQFKTIIPLAAAPNVQPIQVPG-SKFHYVRLV------TATTAGSSAPPVSQ 396

  Fly   428 TQKITVVRPPAATGVPATSTTTSAAAASPAAASKANLAMGNTNKIVMRSMGGSIVPLPSVQTLVS 492
            :..:..  .|.....|....||....:.|...::|      ..::|.:       |:.|...:|:
  Rat   397 SPSVNT--QPLQQAKPVVVNTTPVRMSVPFVQAQA------VKQVVPK-------PINSTSQIVT 446

  Fly   493 KRALGAISNASKPASAASSSATPSASQELPR-KHRLTDLNVQLKQSASVSSEASDSSDAGPEAKK 556
                     .|:|.......|||     ||: :..||:|     ...:|.:.|..:.:.|.....
  Rat   447 ---------TSQPQQRLIMPATP-----LPQIQPNLTNL-----PPGTVLAPAPGTGNVGYAVLP 492

  Fly   557 PRYVITMQQGSQKAASQPVQKLINRTANVQRVVSSSTSPSSNSTKKIYNYVQPTGSNGAKYMICN 621
            .:||..:||                        ||..|.:.||     |:   ||::|.:     
  Rat   493 AQYVTQLQQ------------------------SSYVSIAGNS-----NF---TGTSGIQ----- 520

  Fly   622 SGVPQSSTSAMRRGYTGYVENKTRRPPPISPQQHRFKQMGPQQQSKHQQLQAQAKQRIRQQQLPT 686
                   |.| |..:.|.:                                              
  Rat   521 -------TQA-RVSFNGII---------------------------------------------- 531

  Fly   687 EQSTPIKVEPKLPTLPPGVKANVPAKPLFEVLKPPATAAAAGAVDPLGGMTSRRKHCNCSKSQCL 751
                            |...|:.|.||                             |||:||.||
  Rat   532 ----------------PSESASRPRKP-----------------------------CNCTKSLCL 551

  Fly   752 KLYCDCFANGEFCQDCTCKDCFNNLDYEVERERAIRSCLDRNPSAFKPKITAPNSGDM-RLHNKG 815
            |||||||||||||.:|.|.:|:|||::|.||::||::||||||.||||||.....|:. |.|:||
  Rat   552 KLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKG 616

  Fly   816 CNCKRSGCLKNYCECYEAKIPCSSICKCVGCRNMEDRPD-VDMDSLDGLMGVEGQKKDKAKNK-- 877
            ||||||||||||||||||||.|||||||:||:|.|:.|: ..:..|.....|..|::..||.|  
  Rat   617 CNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLS 681

  Fly   878 ------------QLNENRANIYF---TDDVIEATIMCMISRIVMHEKQNVAVEDMEREVMEEMGE 927
                        .||.....:.|   |.:|.|||..|::::....:|:..:....||.::||.|.
  Rat   682 SQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGR 746

  Fly   928 SLTQIIAFA-KEKQE 941
            .|..:|..| |.|.:
  Rat   747 CLMSVINSAGKAKSD 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mip120NP_001163143.1 TCR 740..775 CDD:281618 23/34 (68%)
TCR 813..850 CDD:281618 32/36 (89%)
Lin54XP_006250719.1 TCR 540..>563 CDD:281618 19/51 (37%)
TCR 614..649 CDD:281618 31/34 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8221
eggNOG 1 0.900 - - E1_KOG1171
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 222 1.000 Inparanoid score I3457
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003047
OrthoInspector 1 1.000 - - otm46451
orthoMCL 1 0.900 - - OOG6_106892
Panther 1 1.100 - - LDO PTHR12446
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1765
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.820

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