DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnf150 and APE3

DIOPT Version :10

Sequence 1:NP_001178022.1 Gene:Rnf150 / 364983 RGDID:1304572 Length:437 Species:Rattus norvegicus
Sequence 2:NP_009845.2 Gene:APE3 / 852589 SGDID:S000000490 Length:537 Species:Saccharomyces cerevisiae


Alignment Length:176 Identity:38/176 - (21%)
Similarity:73/176 - (41%) Gaps:17/176 - (9%)


- Green bases have known domain annotations that are detailed below.


  Rat    35 EKEEWYTAFVNITYTEPESGAAVAGGGGGAELHTEKSECGRYGEHSPKQDARGEVVMASSVHDRL 99
            :.:::|.  |::...|..||..::.....||.....:....:....|.....|::|...:    |
Yeast   127 DMQDYYD--VSLQEFEALSGKIISFNLSDAETGKSFANTTAFALSPPVDGFVGKLVEIPN----L 185

  Rat   100 ACDPN--TKFAAPAHGKHWIALIPKGNCTYRDKIRNAFLQNASAVVIFNVGSNTNETI--TMPHA 160
            .|:..  .....|.|.:..||||.:|.|.:.||...|.....:||||::....:.|.:  |:...
Yeast   186 GCEEKDYASVVPPRHNEKQIALIERGKCPFGDKSNLAGKFGFTAVVIYDNEPKSKEGLHGTLGEP 250

  Rat   161 GVEDIVAIMIPEPKGKELVSLLERNVTVTMYIT-------IGTRNL 199
            ....:..:.:|...||:|::.:..|:..::|..       |.|:|:
Yeast   251 TKHTVATVGVPYKVGKKLIANIALNIDYSLYFAMDSYVEFIKTQNI 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnf150NP_001178022.1 PA_GRAIL_like 45..192 CDD:239037 32/150 (21%)
RING-H2_RNF150 269..323 CDD:438456
APE3NP_009845.2 M28_SGAP_like 78..506 CDD:349873 38/176 (22%)
PA_ScAPY_like 155..284 CDD:239045 29/132 (22%)
Blue background indicates that the domain is not in the aligned region.

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