DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnf150 and SPOM_SPCC4G3.12C

DIOPT Version :10

Sequence 1:NP_001178022.1 Gene:Rnf150 / 364983 RGDID:1304572 Length:437 Species:Rattus norvegicus
Sequence 2:NP_587826.1 Gene:SPOM_SPCC4G3.12C / 2539364 PomBaseID:SPCC4G3.12C Length:821 Species:Schizosaccharomyces pombe


Alignment Length:94 Identity:32/94 - (34%)
Similarity:48/94 - (51%) Gaps:15/94 - (15%)


- Green bases have known domain annotations that are detailed below.


  Rat   247 LGDAAKKAISKLQVRTIRKG------DKETESDFDNCAVCIEGYKPSDVVRIL-PCRHLFHKSCV 304
            ||.|.|...|...|:  |.|      |..:.|..|:|.:|:|.|...|:.|.| .|:|.||::|:
pombe   732 LGPAKKPVASHEDVK--RSGGLFAYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACI 794

  Rat   305 DPWL-LDHRTCPMCKMNILKALGIPPNAD 332
            |.|| ..:.:||:|     :|.|:...|:
pombe   795 DQWLTTGNNSCPLC-----RAHGVTTQAE 818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnf150NP_001178022.1 PA_GRAIL_like 45..192 CDD:239037
RING-H2_RNF150 269..323 CDD:438456 20/55 (36%)
SPOM_SPCC4G3.12CNP_587826.1 RING-H2_EL5-like 765..809 CDD:438124 18/48 (38%)
Blue background indicates that the domain is not in the aligned region.

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