DRSC/TRiP Functional Genomics Resources

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Protein Alignment drk and LSB1

DIOPT Version :9

Sequence 1:NP_476858.1 Gene:drk / 36497 FlyBaseID:FBgn0004638 Length:211 Species:Drosophila melanogaster
Sequence 2:NP_011652.1 Gene:LSB1 / 853037 SGDID:S000003368 Length:241 Species:Saccharomyces cerevisiae


Alignment Length:100 Identity:35/100 - (35%)
Similarity:52/100 - (52%) Gaps:18/100 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 NSLNELVEYHRTASVSRSQDV--KLRDMIPE--------------EMLVQALYDFVPQESGELDF 173
            |..||| |:.:.::|. |.|:  .:...:||              |..|:|||||..|:.|:|..
Yeast    12 NIRNEL-EFLKESNVI-SGDIFELINSKLPEKWDGNQRSPQNADTEEYVEALYDFEAQQDGDLSL 74

  Fly   174 RRGDVITVTDRSDENWWNGEIGNRKGIFPATYVTP 208
            :.||.|.|.::...:|:.|:..|:.|||||.||.|
Yeast    75 KTGDKIQVLEKISPDWYRGKSNNKIGIFPANYVKP 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
drkNP_476858.1 SH3_GRB2_like_N 2..53 CDD:212738
SH2_Grb2_like 56..149 CDD:199828 8/25 (32%)
SH3_GRB2_like_C 156..208 CDD:212739 23/51 (45%)
LSB1NP_011652.1 SH3 55..108 CDD:214620 23/52 (44%)
PRK14971 <100..>156 CDD:237874 7/9 (78%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X588
TreeFam 00.000 Not matched by this tool.
22.000

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