DRSC/TRiP Functional Genomics Resources

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Protein Alignment cid and H3f3c

DIOPT Version :9

Sequence 1:NP_523730.2 Gene:cid / 36495 FlyBaseID:FBgn0040477 Length:225 Species:Drosophila melanogaster
Sequence 2:XP_003750396.1 Gene:H3f3c / 100360868 RGDID:2321290 Length:136 Species:Rattus norvegicus


Alignment Length:177 Identity:51/177 - (28%)
Similarity:66/177 - (37%) Gaps:51/177 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 RRSSTLRRDAGRRQP-------AARDSSTSGEEEDQENRYPTTRSPQTRRMTVQQESKTRAAGPV 112
            |...|.|:..|.:.|       |.|.|:.|.....:.:||                    ..|.|
  Rat     3 RTKQTARKSTGGKAPRKQLATKATRKSAPSTGGVKKPHRY--------------------RPGTV 47

  Fly   113 AAQNQTRRRKAANPMSRAKRMDREIRRLQHHPGTLIPKLPFSRLVREFIVKYSDDEPLRVTEGAL 177
            |.                    |||||.|.....||.||||.|||||....:..|  ||....|:
  Rat    48 AL--------------------REIRRYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSAAI 90

  Fly   178 LAMQESCEMYLTQRLADSYMLTKHRNRVTLEVRDMALMAYICDRGRQ 224
            .|:||:.|.||.....|:.:...|..|||:..:|:.|...|  ||.:
  Rat    91 GALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI--RGER 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cidNP_523730.2 H4 135..219 CDD:419976 34/83 (41%)
H3f3cXP_003750396.1 PTZ00018 1..136 CDD:185400 51/177 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1745
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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