DRSC/TRiP Functional Genomics Resources

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Protein Alignment cbc and CLPS3

DIOPT Version :9

Sequence 1:NP_610876.1 Gene:cbc / 36494 FlyBaseID:FBgn0033842 Length:423 Species:Drosophila melanogaster
Sequence 2:NP_001319471.1 Gene:CLPS3 / 819626 AraportID:AT3G04680 Length:444 Species:Arabidopsis thaliana


Alignment Length:429 Identity:174/429 - (40%)
Similarity:254/429 - (59%) Gaps:30/429 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVLHVS 71
            |...||.:||||.|:.::..::.|  |:|.||:||:||..:....|....|.|:||:.|..:.:.
plant    24 KQVKLERESELRIEVSEEPLRLRV--VNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGATIEMD 86

  Fly    72 GKMDVCYISKETPMVQYVNCHAALEQFRMEA------EEKDRYGPVAMVVGPMDVGKSTLCRILL 130
            |..:..|.:.|||||.|:|.||.|:..|..|      :.:...||..:||||.|.|||||.::||
plant    87 GVTETDYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDSGKSTLTKMLL 151

  Fly   131 NYAVRVGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLY 195
            ::|.:.|.||.:.|||||||||.|.||:|...||.|.:..|||.....|||::||.||:.|..||
plant   152 SWAAKQGWRPTFVDLDVGQGSITIPGSIAAAPIEMPLDPVEGFPLDMALVYYYGHASPNMNVELY 216

  Fly   196 NAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIFVLDQERLYNE 260
            .|:|.::|:|..:....|..::::|::|||.||::|.||..||||...:.|..:.||.||:|::.
plant   217 KALVKELAQVLEKQFVGNPESRAAGMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSR 281

  Fly   261 LLRDV---PKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNTRAPFYPFSFEVKFQDLRL 322
             |:||   ...|.||.|.||||||.|.||:|..:|:.:|:|||||.:: ...|::....|.||::
plant   282 -LKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQEYFYGLSK-ELSPYANTSSFSDLQV 344

  Fly   323 YKI-GAPPLPDSCMPIGMKAEDNKTKVVAVTPTPA------LIHHVLALSFAESVEDDVIGTNVA 380
            ::| |.|..|.|.:|.|..:..|..:|     ||.      |:|.|||:|:||. .|.:|.:||:
plant   345 FRIGGGPQAPKSALPAGSTSVSNPLRV-----TPVNIDDRDLLHSVLAVSYAEE-PDQIISSNVS 403

  Fly   381 GFCCVTEVDMERQAVMLLSPQPRPLPPNAL----LLWSE 415
            ||..||||:::::.:..|:|.|..||...|    |.|.|
plant   404 GFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSLAWLE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbcNP_610876.1 CLP1_N 9..102 CDD:293181 35/92 (38%)
CLP1 11..412 CDD:227910 170/420 (40%)
CLP1_P 116..301 CDD:293183 88/187 (47%)
Clp1 309..420 CDD:284274 42/118 (36%)
CLPS3NP_001319471.1 CLP1 23..442 CDD:227910 173/427 (41%)
CLP1_P 137..324 CDD:406878 88/187 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 173 1.000 Domainoid score I1123
eggNOG 1 0.900 - - E1_COG5623
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4975
Inparanoid 1 1.050 295 1.000 Inparanoid score I811
OMA 1 1.010 - - QHG53868
OrthoDB 1 1.010 - - D814241at2759
OrthoFinder 1 1.000 - - FOG0003461
OrthoInspector 1 1.000 - - otm2750
orthoMCL 1 0.900 - - OOG6_101503
Panther 1 1.100 - - LDO PTHR12755
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3913
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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