DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cbc and clp1

DIOPT Version :9

Sequence 1:NP_610876.1 Gene:cbc / 36494 FlyBaseID:FBgn0033842 Length:423 Species:Drosophila melanogaster
Sequence 2:NP_001333167.1 Gene:clp1 / 565621 ZFINID:ZDB-GENE-030131-5306 Length:443 Species:Danio rerio


Alignment Length:423 Identity:223/423 - (52%)
Similarity:305/423 - (72%) Gaps:13/423 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVLHV 70
            |..:.|:.::|||||:|..: :|.:.|:||.||:||:||.:.|:|.||.|:|:|:||:|||.:.:
Zfish    24 GTRFDLDKETELRFEVEAGE-RVQLELLSGLAEIFGSELNRNKKYTFGPGSKIAVFTWQGCGVAL 87

  Fly    71 SGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVR 135
            |||.:|.|:||:|||:.|:|.||||||.|.:||:.:..||..|||||.||||||:||:|||||||
Zfish    88 SGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAEKDNERGPRVMVVGPTDVGKSTVCRMLLNYAVR 152

  Fly   136 VGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPSGNSVLYNAVVS 200
            :||||...:|||||.|:::.|:::.:.|||||:|||||:..||||:|||..:|..|..|||.:.|
Zfish   153 LGRRPTLVELDVGQSSVSVPGTMSALCIERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTS 217

  Fly   201 KMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIFVLDQERLYNELLRDV 265
            .:|:...|....|:|....|.|||||||||||||..|:|.|.|:....:.|||||||||||.||:
Zfish   218 SLADAFSQRCEVNRRASVGGCIINTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDL 282

  Fly   266 PKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNTRAPFYPFSFEVKFQDLRLYKIGAPPL 330
            |..|.|||||||||||||||:.|.|.||::|:|||||.....|||.:|:|:|.|:|:||||||.:
Zfish   283 PHFVRVVLLPKSGGVVERSKDCRRETRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSI 347

  Fly   331 PDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLALSFAESVEDD--------VIGTNVAGFCCVTE 387
            ||||:|:||..:|.:.|:|.|:|...|.||||::|   ||:|:        ::.:...||..||.
Zfish   348 PDSCLPLGMSQDDTQLKLVPVSPGRDLTHHVLSVS---SVDDEAEVGQSRGILESPACGFIVVTA 409

  Fly   388 VDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
            ||.:.|.:.:|||.|||||.:.||: .:::|:|
Zfish   410 VDTQAQVMTVLSPAPRPLPRHTLLI-MDIRFID 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbcNP_610876.1 CLP1_N 9..102 CDD:293181 48/92 (52%)
CLP1 11..412 CDD:227910 219/408 (54%)
CLP1_P 116..301 CDD:293183 110/184 (60%)
Clp1 309..420 CDD:284274 52/118 (44%)
clp1NP_001333167.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595559
Domainoid 1 1.000 237 1.000 Domainoid score I2260
eggNOG 1 0.900 - - E1_COG5623
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4975
Inparanoid 1 1.050 453 1.000 Inparanoid score I1573
OMA 1 1.010 - - QHG53868
OrthoDB 1 1.010 - - D370259at33208
OrthoFinder 1 1.000 - - FOG0003461
OrthoInspector 1 1.000 - - oto41626
orthoMCL 1 0.900 - - OOG6_101503
Panther 1 1.100 - - LDO PTHR12755
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R210
SonicParanoid 1 1.000 - - X3913
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

Return to query results.
Submit another query.