Protein Alignment cbc and Clp1

DIOPT Version :10

• Sequence 1: NP_610876.1
• Gene: cbc / 36494
• FlyBaseID: FBgn0033842
• Length: 423
• Species: Drosophila melanogaster
• Sequence 2: NP_001009599.1
• Gene: Clp1 / 311166
• RGDID: 1307679
• Length: 425
• Species: Rattus norvegicus
• Alignment Length: 426
• Identity: 237/426 - (55%)
• Similarity: 313/426 - (73%)
• Gaps: 9/426 - (2%)

  Fly     1 MSEDQGKD------YTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVA 59
            |||:...|      :.||.::|||||:|...: |.:.|::|.||:|||||.:.|::.|..|||||
  Rat     1 MSEESNDDKKPTTKFELERETELRFEVEASQS-VQLELLAGMAEIFGTELTRNKKFTFDAGAKVA 64

  Fly    60 IFTYQGCVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRYGPVAMVVGPMDVGKST 124
            :||:.||.|.:||:.:|.|:||:|||:.|:|.|.||||.|.:||:::..||..|||||.||||||
  Rat    65 VFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKST 129

  Fly   125 LCRILLNYAVRVGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPS 189
            :||:|||||||:||||.|.:|||||||::|.|::..:.|||||:|||||:..||||||||..:|.
  Rat   130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGSTTPG 194

  Fly   190 GNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIFVLDQ 254
            .|..|||.:.|::|:|..|....|:|...||.:|||||||||.||..|:|||.|:....:.||||
  Rat   195 TNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQALVHAASAFEVDVVVVLDQ 259

  Fly   255 ERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNTRAPFYPFSFEVKFQD 319
            |||||||.||:|..|..||||||||||||||:.|.|.||:||:||||| .|..|||.:|.|||.|
  Rat   260 ERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYG-FRGCFYPHAFNVKFSD 323

  Fly   320 LRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLALSFAESVEDDVIGTNVAGFCC 384
            :::||:|||.:||||:|:||..|||:.|:|.|||...::||:|::|.||..|:::..|:||||..
  Rat   324 VKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIV 388

  Fly   385 VTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFMD 420
            ||.||:|.|...:|||.|||||.|.||: .:::|||
  Rat   389 VTSVDVEHQVFTVLSPAPRPLPKNFLLI-MDIRFMD 423

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cbc	NP_610876.1	CLP1	11..412	CDD:227910	229/400 (57%)
		CLP1_P	116..301	CDD:406878	115/184 (63%)
Clp1	NP_001009599.1	CLP1	14..423	CDD:227910	231/411 (56%)
		CLP1_P	121..306	CDD:406878	115/184 (63%)