Protein Alignment cbc and clpf-1

DIOPT Version :10

• Sequence 1: NP_610876.1
• Gene: cbc / 36494
• FlyBaseID: FBgn0033842
• Length: 423
• Species: Drosophila melanogaster
• Sequence 2: NP_001040858.1
• Gene: clpf-1 / 175442
• WormBaseID: WBGene00010304
• Length: 428
• Species: Caenorhabditis elegans
• Alignment Length: 427
• Identity: 180/427 - (42%)
• Similarity: 284/427 - (66%)
• Gaps: 9/427 - (2%)

  Fly     1 MSEDQGKDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQG 65
            |||:..:::.|:.|.||||.... |:.|.:.||.|:||:|||||:..|:|.|...::||.||::|
 Worm     1 MSEENVQEFVLKEDCELRFAAGD-DSDVCLELVKGYAEIFGTELLLNKKYTFPAKSRVAAFTWKG 64

  Fly    66 CVLHVSGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEK------DRYGPVAMVVGPMDVGKST 124
            ..:.:.|..:..|:::.||||.|:|.|||:|:.|.:.||:      ...||..::|||.||||:|
 Worm    65 ATIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREEQAAGNSNKAKGPRLLLVGPTDVGKTT 129

  Fly   125 LCRILLNYAVRVGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLVYHFGHKSPS 189
            :.|||.||:||.||.|::.:|||||.|:::.|:||.:|:::.|:|.:||.:..|:|::|||.|||
 Worm   130 VSRILCNYSVRQGRTPIFVELDVGQNSVSVPGTVAAVLVQKTADVIDGFERNQPIVFNFGHTSPS 194

  Fly   190 GNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHAAKAYGACAIFVLDQ 254
            .|..||.|:..:||......:..|...|..|:||||||||.|.||..::.||.|:....:.|||.
 Worm   195 ANLSLYEALFKEMATTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCIVKAASAFEVDVVIVLDH 259

  Fly   255 ERLYNELLRDVPKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNTRAPFYPFSFEVKFQD 319
            ||||::|.:::|:.|.:..:||||||.:|:.::|.:.|.:.:..||||......|||:|:|.|.|
 Worm   260 ERLYSDLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVHRYFYGTRANNLYPFTFDVSFDD 324

  Fly   320 LRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHHVLALSFAESVEDDVIGTNVAGFCC 384
            :.|.||||..|||||:|.||:.|:::||:|.:.|:..:.||:.|.|.:...:::|:.:.|.|||.
 Worm   325 VTLCKIGAEQLPDSCLPFGMEVENHETKLVIMEPSADIKHHLFAFSRSTKADENVLKSPVFGFCL 389

  Fly   385 VTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFMDN 421
            |||||:|::.:.:|.|| |.: |:.:|::|::..:|:
 Worm   390 VTEVDLEKRTMSILCPQ-RTI-PSKVLVFSDITHLDD 424

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cbc	NP_610876.1	CLP1	11..412	CDD:227910	174/406 (43%)
		CLP1_P	116..301	CDD:406878	82/184 (45%)
clpf-1	NP_001040858.1	CLP1	6..423	CDD:227910	176/419 (42%)
		CLP1_P	121..306	CDD:406878	82/184 (45%)