DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cbs and ccdc186

DIOPT Version :9

Sequence 1:NP_610875.1 Gene:cbs / 36492 FlyBaseID:FBgn0086757 Length:611 Species:Drosophila melanogaster
Sequence 2:XP_009305037.1 Gene:ccdc186 / 557112 ZFINID:ZDB-GENE-100318-3 Length:955 Species:Danio rerio


Alignment Length:622 Identity:134/622 - (21%)
Similarity:262/622 - (42%) Gaps:124/622 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LRSRRVSINSNSADDVGGGGFYNESEQLCELRSQCNELTTK-LSTVTQGLQQ------LQEEKTR 92
            |::.:.:.|.|..|........:|.|:.....|..:||..: |::.::|:::      ||:    
Zfish   180 LQNSQTNANLNPYDTECSRKLLSEIERSLSQESLLDELEDELLNSQSEGVRKGSHPNGLQK---- 240

  Fly    93 VDKTNEILLE---SVRVAQTQKDI--YCEEQEKIQNLQQ---IEIDKLKNLLSFREQESVDRMGL 149
             |:.:.:|.|   ..:.:|.:|.|  ..||.:|.|.|..   .|.|.:::.|..|          
Zfish   241 -DQNSMVLFEKCVQYKYSQQEKAIKGLLEENKKHQELILGICSEKDNMRDELKKR---------- 294

  Fly   150 MRQQTQQIESLSEELERLRPIESVAEDLRDELEQLRHSTQQEKNLLTTTLAAVQEENRHLKKRM- 213
            |..:.|.:.::.:...|   :|.:.::|:|..::|.|..|..||       |:|:..|.:..|: 
Zfish   295 METEKQHLYTIKKFESR---VEELTKELKDSRDKLVHQDQAAKN-------AIQQMQREMAYRLE 349

  Fly   214 ---KIVEESRLES----LGKLNSEQQVQALIREHKLLEQHLEEAHLQLSDIKGSWSGQNLALETQ 271
               |..||:|.|.    :..:..|::...|.||.:.||:.|.||..::.  |.:..|..||.|. 
Zfish   350 QANKKCEEARQEKETMVMKYVRGEKEALDLRREKEQLEKKLREATAEVD--KQARRGNTLAQEK- 411

  Fly   272 VSRLSKQVAEETTEKRKALKSRDDAIESRKQVSFELEKAKDEIKQRDDKVKLLEEEIDELSVALK 336
             .||.:....:..|..:.::              ||||.|:||.....|||..:.::...:.:.|
Zfish   412 -GRLQQLYDAKENEVTRLMR--------------ELEKVKEEINSHVIKVKWAQNKLKSETDSHK 461

  Fly   337 ECREENEQQVLFERNKSQNLETEVKDLKTRLTAADDRFSEYSSNAEQVAQKLRVQVTEKQEQLD- 400
            |.::                  .:|:...:||.|.:...:...|.:.:.:..:.....|..:|| 
Zfish   462 ETKD------------------RLKETTAKLTQAKEETEQIRKNCQDMIRTYQESEEIKSNELDA 508

  Fly   401 ---ETIMQLEIEREEKMTAI-LRNAEIAQSEDILR------QQLRLERSEASDLQERNNQLVRDI 455
               ||..:||.:::|:...: :..|:|.:.||:.|      .:|...|::...|::...:...::
Zfish   509 KLRETKGELEKQKQEQTDQLEMHKAKIKELEDLKRTFKEGMDELTTLRTKVKCLEDERPRWEDEL 573

  Fly   456 SEARQTLQQVSSTAQDNADKLT-------EFERVQLEIIEKNKTIKTLNQRLIDLKKTVQ----- 508
            .:.|:.:.:..:..|:..:|||       :.:|.:.||....:.::.||.::.||::.::     
Zfish   574 CKYREIINRQKAEIQNQREKLTAITRLEEQHQRDEQEIASLQEEVENLNSQITDLQRDIEGSRTR 638

  Fly   509 --------KELRSAQISTDSESHPTTTPGHRISSSSLEAFS-TGDKGNCV--IMDEVNF--QYLK 560
                    ::|.|......|||:.......|::|||.|..: ..|...|:  :||.:..  |..:
Zfish   639 EAELLGFTEKLSSKNAQLQSESNSLQAQLDRLNSSSRELHNKLEDTERCLSDMMDRLKTEEQQRQ 703

  Fly   561 HVIVKFLTSR---EVEARHLVRAVSTLL-QLTTEEEK 593
            ..::...|.|   :.|...|...|..|. :|.|::.|
Zfish   704 EEVLALQTERTSLQTETSQLKTRVEELRDELVTQKRK 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbsNP_610875.1 AmyAc_family <276..>372 CDD:298606 17/95 (18%)
Grip 553..598 CDD:197860 10/47 (21%)
ccdc186XP_009305037.1 SbcC 289..>764 CDD:223496 108/508 (21%)
DUF342 <414..505 CDD:302792 20/122 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0992
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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