DRSC/TRiP Functional Genomics Resources

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Protein Alignment cbs and Golga1

DIOPT Version :9

Sequence 1:NP_610875.1 Gene:cbs / 36492 FlyBaseID:FBgn0086757 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_001381951.1 Gene:Golga1 / 311919 RGDID:1311305 Length:758 Species:Rattus norvegicus


Alignment Length:775 Identity:199/775 - (25%)
Similarity:336/775 - (43%) Gaps:200/775 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFATLKNKIKEETGDDVVQSANQRYPGNNNNNYRLRSRR--VSINSNSADDVGGGGFYNE---SE 60
            |||.||.||.|||      :..|| ||......|..|:.  .|:.::|.||....|..:.   |.
  Rat     1 MFAKLKKKIAEET------AVAQR-PGCTPRIPRSVSKESVASMGADSGDDFASDGSSSREDLSS 58

  Fly    61 QLCELRSQCNELTTKLSTVTQGLQQLQEEKTRVDKTNEILLE-----SVRVAQTQKDIY------ 114
            ||.....|..:|..:||...:.::.||:.|.::    ||.||     |:|..|.|.:.:      
  Rat    59 QLLRRNEQIRKLEARLSDYAEQVRNLQKIKEKL----EIALEKHQDSSMRKFQEQNETFQANRAK 119

  Fly   115 ----------CEEQEKIQNLQQIEIDK---------LKN--LLSFREQESVDRM-GLMRQQTQQI 157
                      .::||..:.::|:|.:|         :||  |..|::::.:|.: |..:|:..::
  Rat   120 MAEGLALALARKDQEWSEKMEQLEKEKRFLTSQLQEVKNQSLSLFQKRDEIDELEGFQQQEISKV 184

  Fly   158 E----------------------SLSEELERLRPIESVAEDLRDELEQL-RH--STQQEKNLLTT 197
            :                      .|:...|.|.....::.||...|::| ||  :.:::::.||.
  Rat   185 KHMLLKKEECLGKMEHELDARTRDLNRTQEELVTSNQLSSDLSQRLQELQRHCATLEEQRDHLTA 249

  Fly   198 TLAA-------------------------VQEENRHLKKRMKIVE---------ESRLESLGKLN 228
            :.|.                         :|:.|...:::.|::.         |.|||.  .|:
  Rat   250 SKAGAEHKIVVLEQKEQELQAIIQQFSIDLQKVNAETQEKEKVITHLQDKVTFLEKRLEQ--DLS 312

  Fly   229 SEQQVQALIREHKLLEQHLEEAHLQLSDIKGSWSGQNLALETQVSRL--SKQVAEE-TTEKRKAL 290
            .|..||.|::|..:.||.|::...||...|.|.:.....|||:|..|  |.|.||| .::.|..:
  Rat   313 GEDHVQELLKEKTVAEQKLQDTRQQLLAAKNSHTKAVDLLETRVKDLEQSLQAAEEQLSQSRDVV 377

  Fly   291 KSRDDAIE-----------SRKQVSFELEKAKDEIKQRDDKVKLLEE--------------EIDE 330
            ..::..|:           |::||....:..::.|...:.:::.||:              ::.:
  Rat   378 AGQEAQIQKLITTNQENNLSQQQVLALEQHCRERIHALEAQIEALEQTRAADQIASEQGMRQLQQ 442

  Fly   331 LSVALKECREENEQQVLFERNKSQNLETEVKDLK----------TRLTAADDRFSEYSSNAEQVA 385
            .:|||||.|:|..|.:       |:.:.|:|.||          ..:..|.:...:.....:|.|
  Rat   443 ENVALKESRDECIQSL-------QHHQLELKKLKDEWNQREIVSVAMAQALEEVRKQREEFQQQA 500

  Fly   386 QKLRVQVTEKQEQL---DETIMQLEIEREE----KMTAILRNAEIAQSEDIL---RQQLRLERSE 440
            .:|...:.||.:.|   ||.::|.|.|.::    ..:|:|:..::.:..:.|   |.|..:..:.
  Rat   501 TELTAIIEEKNQSLCEKDEALLQKEEELQQLEKGHNSALLQMHQLQRELETLKTFRAQEAMPATT 565

  Fly   441 ASDLQERNNQLVRDISEARQTLQQVSSTAQDNAD--------KLTEFERVQLE--IIEKNKTIKT 495
            ..|......|....||:|.|..:.....|:...:        |..:.|:..||  :.||||.:|.
  Rat   566 GEDCLPLQGQEPLVISKAMQNCEYELPAAEGTPNGEVGAMDLKQLQKEKQDLEQQLTEKNKIMKQ 630

  Fly   496 LNQRLIDLKKTVQKELRSAQISTDSE----------SHPTTTPGHRISSSSLEAFSTGDKGNCVI 550
            :.||:::||||:||||:   |..|:|          ..|...|....::...||           
  Rat   631 MQQRMLELKKTLQKELK---IKPDNELFEVREKTGPEIPNMAPSVTNNTDLTEA----------- 681

  Fly   551 MDEVNFQYLKHVIVKFLTSREVEARHLVRAVSTLLQLTTEEEKLLHDTLNWKMSWFGMKP 610
             .|:||:|||||::||::.||.||.||::|||.||..:.|||.:|.:||.:||||||.||
  Rat   682 -REINFEYLKHVVLKFMSCRESEAFHLIKAVSVLLNFSQEEENMLKETLEYKMSWFGSKP 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cbsNP_610875.1 AmyAc_family <276..>372 CDD:298606 27/131 (21%)
Grip 553..598 CDD:197860 25/44 (57%)
Golga1NP_001381951.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10694
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 162 1.000 Inparanoid score I4125
OMA 1 1.010 - - QHG47149
OrthoDB 1 1.010 - - D414719at33208
OrthoFinder 1 1.000 - - FOG0007916
OrthoInspector 1 1.000 - - oto97422
orthoMCL 1 0.900 - - OOG6_108912
Panther 1 1.100 - - LDO PTHR23157
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5869
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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