DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cnn and Pde4dip

DIOPT Version :9

Sequence 1:NP_001246293.1 Gene:cnn / 36491 FlyBaseID:FBgn0013765 Length:1378 Species:Drosophila melanogaster
Sequence 2:XP_017446558.1 Gene:Pde4dip / 64183 RGDID:708410 Length:2587 Species:Rattus norvegicus


Alignment Length:1678 Identity:357/1678 - (21%)
Similarity:621/1678 - (37%) Gaps:559/1678 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 ETVTS-------FLEENGAAEIDRRVLRKLAEALSKSIDDTSPGALQDV---------TMENSYA 78
            |.|:|       |.||:|  |:..|...  |.|......|..|.....|         ...:|..
  Rat   126 EAVSSAPWMRHYFGEEDG--EMVPRTSN--AAAFLSDTKDRGPPVQSQVWRSAEKVPFGQAHSLR 186

  Fly    79 SFDVPRPPGGGNSPLPSQGRSVRELEEQMSALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQ 143
            :|:.|        || .|.:::|:.|:.::.|:||||:|||||||||| :...:.:.|.|.:.|:
  Rat   187 AFEKP--------PL-VQTQALRDFEKHLNDLKKENFSLKLRIYFLEE-RMQQKYEVSREDVYKR 241

  Fly   144 LIDAKIEIATLRKTV-DVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQI-HAYQMAESG 206
            .|:.|:|:.:|::.: |.|..|.|..|    ..|:|..:.:.:.:..::|.|::. |.|::.::.
  Rat   242 NIELKVEVESLKRELQDRKQHLHKTWA----DEEDLNSQNEAELRRQVEEPQQETEHVYELLDNN 302

  Fly   207 GQ--------------PVENIAKTRKMLRLESEVQRLEEELVNIE---------ARNVAARNELE 248
            .|              .:|.:.:..|...||.. :|.::...|.|         .:..||..:.:
  Rat   303 IQLLQEESRFAKDEATQMETLVEAEKGCNLELS-ERWKDATKNREDAPGDQVKLDQYSAALAQRD 366

  Fly   249 FMLAERLESLTACEGKIQELAIKNSELVERLEK----------------------ETASAESSNE 291
            ..:.|..:||.|.||.:::|:.:..:|:..||:                      ||.:.:.|  
  Rat   367 RRIEELRQSLAAQEGLVEQLSREKQQLLHLLEEPGGMEVQPMPKGLPTQQKPDLNETPTTQPS-- 429

  Fly   292 AIDSLKVELEACRKENQDLVTS--IRTLKHDMKRQVRSMKEAANTMDVQRQSILLLEATIKRKEK 354
            ..||...||:  .|..|..||:  ::...:||..::||.:|::...|...||   |:..:|.:|.
  Rat   430 VSDSHLAELQ--DKIQQTEVTNKILQEKLNDMSCELRSAQESSQKQDTTIQS---LKEMLKSRES 489

  Fly   355 SCGSMQKNVLNYEALIAKLNAELETMR-------------QQNVYFRELSENL--QQKEVRQLDR 404
            ....:.:.:......:|||...|...:             ||.|...:|...|  .|.|:::|.|
  Rat   490 ETEELYQVIEGQNDTMAKLREMLHQSQLGQLQSSEGIAPAQQQVALLDLQSALFCSQLEIQKLQR 554

  Fly   405 GVAIVQPMRMTADAGRFVWQSGTIVAQEPLPLERQSAAATSNVSVSAVRLSSGPPPDQTYPVNGH 469
              .:.|..|..|| |:...|.....|||   .|:|..||..                       |
  Rat   555 --LLRQKERQLAD-GKRCMQFVEAAAQE---REQQKEAAWK-----------------------H 590

  Fly   470 DRAKYGLLQLFAAKLDWISAVPLALGHLALKIILLAMRLHSCLQNVHIPLRANR----------- 523
            ::                 .:..||.|       |...|||..|.:|: |.|.:           
  Rat   591 NQ-----------------ELRKALQH-------LQGELHSKSQQLHV-LEAEKYNEIRTQGQNI 630

  Fly   524 -DLGAQLADKICELQEAQEKL------------------KERERIHEQACRTIQKLMQKLSSQEK 569
             .|...|:.|...:||.||.|                  |.|:||.::|....:.:.:|.|:.|:
  Rat   631 QHLSHSLSHKEQLIQELQELLQYRDTTDKTLDTNEVFLEKLRQRIQDRAVALERVIDEKFSALEE 695

  Fly   570 EIKKLNQENEQSANKEND-----CAKTVISPSSSGRSMSDNEASSQEMSTNLRVRYELKINEQEE 629
            :.|:|.|......::::|     |.            :|.|||:.|.|.:.||.|          
  Rat   696 KDKELRQLRLAVRDRDHDLERLRCV------------LSANEATMQSMESLLRAR---------- 738

  Fly   630 KIKQLQTEVKKKTANLQNL--VNKEL------WEKNRE--VERLTKLLANQQKTLPQISEESAGE 684
                 ..||::.||..|||  :.:||      |:|.:|  :::|...|.::.|.:..:|      
  Rat   739 -----GLEVEQLTATCQNLQWLKEELETKFGHWQKEQESIIQQLQTSLHDRNKEVEDLS------ 792

  Fly   685 ADLQQSFTEAEYMRALERNKLLQRKVDVLFQRLADDQQNSAVIGQLRLELQQARTEVETADKWRL 749
            |.|.......:...|.|..:.||||..|| |.|..|:...|:..::                   
  Rat   793 ATLLHKLGPGQSEVAEELCQRLQRKERVL-QDLLSDRNKQAMEHEM------------------- 837

  Fly   750 ECVDVCSVLTNRLEELAGFLNSLLKHKDVLGVLAADRRNAMRKAVDRSLDLSKSLNMTLNITATS 814
                          |:.|.|.|       :|....:|:....|.|...::.:..|          
  Rat   838 --------------EVQGLLQS-------MGTREQERQAVAEKMVQAFMERNSEL---------- 871

  Fly   815 LADQSLAQLCNLSEILYTEGDASHKTFNSHEELHAATSMAPTVENLKAENKALKKELEKRRSSEG 879
               |:|.|.....|::     |:.:.|.|::.. .|||:.|                     ..|
  Rat   872 ---QALRQYLGGKELM-----AASQAFISNQPA-GATSVGP---------------------HHG 906

  Fly   880 QRKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSLAAPEQAISESESEGRTCATR 944
            ::.::.|..:||:  |:.:...|..|    .|:.|..|.: |:::|..|:.:|.::.|....|.:
  Rat   907 EQTDQGSTQMPSR--DDSTSLTAREE----ASIPRSTLGD-SDTVAGLEKELSNAKEELELMAKK 964

  Fly   945 QDRNRNSE-RIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLR---CLDITQQL---EQLRAI 1002
            :   |.|: .::.|:..:|.::|.:   |.|..:|::..:..|::   ..|:..||   |.:.|:
  Rat   965 E---RESQIELSALQSMMAVQEEEL---QVQAADLESLTRNIQIKEDLIKDLQMQLVDPEDMPAM 1023

  Fly  1003 NEALTADLHAIGSHEEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIE 1067
             |.||.::..:  .|:...||.|.|...:|::...|.:....:...|::.| .|||.:|....:.
  Rat  1024 -ERLTQEVLLL--REKVASVEPQGQEGSENRRQQLLLMLEGLVDERSRLNE-ALQAERQLYSSLV 1084

  Fly  1068 QLHA---------------DSVETLQSQLQKL---KLDAVQQLE--------------------- 1093
            :.||               :..:.|:|:|:::   .|:.:.:||                     
  Rat  1085 KFHAQPETSERDRTLQVELEGAQVLRSRLEEVLGRSLERLSRLETLAAIGGATAGDETEDTSTQF 1149

  Fly  1094 -----------EHERLHREALERDWVALTTYQEQ------------------AQQLLELQRSLDY 1129
                       .|::|.:.:||:   :|||.:.|                  .:::|.|:..:..
  Rat  1150 TDSIEEEAAHNSHQQLIKVSLEK---SLTTMETQNTCLQPPSPVGEDGNRHLQEEMLHLRAEIHQ 1211

  Fly  1130 HQENE-------KELK---------------QTLVENELATRALKKQ------------------ 1154
            |.|.:       ||||               .|::...|....||:|                  
  Rat  1212 HLEEKRKAEAELKELKAQIEEAGFSSVSHIRNTMLSLCLENAELKEQMGEAMSDGWEVEEDKEKG 1276

  Fly  1155 ------------LDESTLQAS-KAVMERTK-AYND----KLQLEKRSEE----------LRLQLE 1191
                        |.|.:|||. :.|..|.| |||.    |.||..||.|          :||..|
  Rat  1277 EVMVETVVAKGGLSEDSLQAEFRKVQGRLKSAYNIINLLKEQLVLRSSEGNTKEMPEFLVRLARE 1341

  Fly  1192 A--------LKEEHQKLLQKR-------------------------SNSSDVSQSGYTSEEVAVP 1223
            .        ..|:||...|:.                         .|.|....||: ..:.::|
  Rat  1342 VDRMNMGLPSSEKHQHQEQENMTARPGPRPQSLKLGTALSVDGYQLENKSQAQDSGH-QPQFSLP 1405

  Fly  1224 MGPP--SGQATTCKQ-----------AAAAVLGQRVNTSSPDLGIESDAGRISSVEVSNAQ-RAM 1274
            ....  ..|...|:|           :.|.|..| .|.......|.|:    |.|:..:.| :..
  Rat  1406 GSTKHLRSQLAQCRQRYQDLQEKLLISEATVFAQ-ANQLEKYRAILSE----SLVKQDSKQIQVD 1465

  Fly  1275 LKTVEMKTEGSASPKAKSEESTSPDSKSN-------VATGAAT---------VHDCAKVDLENAE 1323
            |:.:..:|.|.:..:|:.||:|||:.:.:       :..|..:         |....|..|||..
  Rat  1466 LQDLGYETCGRSENEAEREETTSPECEEHGNLRPVVLVEGLCSEQGYLDPVLVSSPVKKPLENKP 1530

  Fly  1324 LRRKLIRTKRAFEDTYEKLRMANKAKAQVEKDIKNQILKTHNVLRNVRSNMEN 1376
            .:|:..:.:...:|: ..||       :..:|:|.|:...:.|::|:||.:.:
  Rat  1531 GKREEFQAQGTSDDS-SLLR-------KDIRDLKAQLQNAYKVIQNLRSRVRS 1575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cnnNP_001246293.1 Cnn_1N 101..170 CDD:285263 28/69 (41%)
HMMR_N 891..1203 CDD:292527 95/462 (21%)
FAM76 <1019..1087 CDD:292665 17/85 (20%)
Pde4dipXP_017446558.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I10737
eggNOG 1 0.900 - - E1_2BXW1
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 149 1.000 Inparanoid score I4301
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46501
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.050

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