DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser8 and Tmprss2

DIOPT Version :10

Sequence 1:NP_610874.1 Gene:Ser8 / 36489 FlyBaseID:FBgn0019928 Length:260 Species:Drosophila melanogaster
Sequence 2:XP_008766769.1 Gene:Tmprss2 / 156435 RGDID:620766 Length:580 Species:Rattus norvegicus


Alignment Length:244 Identity:96/244 - (39%)
Similarity:132/244 - (54%) Gaps:24/244 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RIVGGTASSIEDRPWQVSLQRSGSHFCGGSIISNNIIVTAAHCLDTPTTVSNLR---IRAGSNKR 95
            |||||:.:|..|.||||||...|.|.||||||:...|||||||::.|  :|:.|   ..||..|:
  Rat   253 RIVGGSTASPGDWPWQVSLHVQGIHVCGGSIITPEWIVTAAHCVEEP--LSSPRYWTAFAGILKQ 315

  Fly    96 T--YGGVLVEVAAIKAHEAYNSNSKINDIGVVRLKTKLTFGSTIKAITMASATPAHGSAAS---- 154
            :  :.|...:|..:.:|..|:|.:|.|||.:::|:|.|.|...:|.:.:    |..|....    
  Rat   316 SLMFYGSRHQVEKVISHPNYDSKTKNNDIALMKLQTPLAFNDVVKPVCL----PNPGMMLDLAQE 376

  Fly   155 --ISGWGKTSTDGPSSATLLFVDTRIVGRSQCGSSTYGYGSFIKATMICAA--ATNKDACQGDSG 215
              |||||.|...|.:|..|......::..|:| :|.|.|.:.|...||||.  ..:.|:||||||
  Rat   377 CWISGWGATYEKGKTSDVLNAAMVPLIEPSKC-NSKYIYNNLITPAMICAGFLQGSVDSCQGDSG 440

  Fly   216 GPLVSGGQ----LVGVVSWGRDCAVANYPGVYANIAELRDWVLQAQKTV 260
            ||||:...    |:|..|||..||.|..||||.|:....||:.|..:.:
  Rat   441 GPLVTLKNEIWWLIGDTSWGSGCAKAYRPGVYGNVTVFTDWIYQQMRVI 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ser8NP_610874.1 Tryp_SPc 35..253 CDD:238113 93/234 (40%)
Tmprss2XP_008766769.1 LDLa 112..147 CDD:238060
SRCR_2 152..247 CDD:464747
Tryp_SPc 254..485 CDD:238113 94/237 (40%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.