DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18278 and sgsh

DIOPT Version :9

Sequence 1:NP_725289.1 Gene:CG18278 / 36487 FlyBaseID:FBgn0033836 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_001116740.1 Gene:sgsh / 563849 ZFINID:ZDB-GENE-030131-4958 Length:511 Species:Danio rerio


Alignment Length:538 Identity:127/538 - (23%)
Similarity:206/538 - (38%) Gaps:132/538 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IILVLAC--LGNTASEKLPNILLILSDD----QDVELRGMFPMEHTIEMLGFGGALFHNAYTPSP 66
            ::.:|.|  :|...|.   |:|||::||    .||....:....| :..|.....:|.||:|...
Zfish     9 LLCLLLCFDVGGCRSR---NVLLIIADDGGFETDVYNNTVVQTPH-LRALSKRSLIFKNAFTSVS 69

  Fly    67 ICCPARTSLLTGMYAHNHGTRNNSVSGGCYGPHWRRALE-PRALPYILQQHGYNTFFGGKYLNQY 130
            .|.|:|:::|||:..|.:|     :.|...|.|...:.: .::||.:|::...:|...||   ::
Zfish    70 SCSPSRSTILTGLPQHQNG-----MYGLHQGVHHFNSFDGVQSLPLLLKRANIHTGIIGK---KH 126

  Fly   131 WGAGDVPKGWNHFYGLHGNSRYYNYTLRENSG-NVHYESTYLTDLLRD--RAADFLRNATQSSEP 192
            .|.|.|       |...     :.||...||. .|....|.:..|:|.  ::....|:.|:...|
Zfish   127 VGPGPV-------YPFD-----FAYTEETNSVLQVGRNITKIKLLVRKFFQSHKEERSETKEERP 179

  Fly   193 FFAMVAPPAAHEPFTPAPRHEGVFSHIEAL--------RTPSFNQVKQDKHW---LVRAARRLPN 246
            ||..||....|......|:: |||  .|..        |.|.:    :.|::   .|:....:|:
Zfish   180 FFLYVAFHDPHRCGHSQPQY-GVF--CEKFGNGESGMGRIPDW----EPKYYSPDQVKVPYFIPD 237

  Fly   247 ETINTIDTYFQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQFAQPF--DKRQ 309
            ......|...|  :.|:..:|:.:..::..|.......:|.:||:||||.       ||  .:..
Zfish   238 TPAARADIAAQ--YTTVSRLDQGIGLVLEELRKAGFENDTLVIYSSDNGI-------PFPNGRTN 293

  Fly   310 PYETDINVPLLIRGP------GIAPESHIDTAVSLVDLAPTILAWADIDTPSYMDGQSFHELLLN 368
            .|.:.:..|:|:..|      |...:::    |||:|:.||||.|..:..|||.           
Zfish   294 LYGSGVKEPMLLSSPEHQQRWGKLSQAY----VSLLDITPTILDWFSLPYPSYS----------- 343

  Fly   369 KRRRVPFFERSLLIEYWGEGTLATFNPECPWP---EKDRLAQCT---PAADCHCQDAWNNTYACL 427
                   ...|..:|..|...|.....|..|.   ....|.:.|   |....|     ...|..|
Zfish   344 -------LSMSQPVELTGRSLLPALISEPSWDTVFSSQSLHEVTMFYPMRSIH-----KGPYRLL 396

  Fly   428 RNIRHR-----EDRIYCE--FRD-----------------NENFL----EAYDLQLDPFQMTNIA 464
            .|:.:|     :...|..  |:|                 ||.:.    |.:|::.||.:..|:|
Zfish   397 HNLHYRMPFPIDQDFYISPTFQDLLNRTQSGRPTGWFKTLNEYYYRQRWELFDVRTDPMEKVNLA 461

  Fly   465 YDL--LPIERALYSLRLK 480
            .||  ..:..:|..|.||
Zfish   462 GDLDYSEVLESLKDLLLK 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18278NP_725289.1 G6S 24..467 CDD:293766 117/503 (23%)
AslA 24..464 CDD:225661 116/500 (23%)
sgshNP_001116740.1 SGSH 25..481 CDD:293751 123/519 (24%)
AslA 25..461 CDD:225661 116/499 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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