DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18278 and gns

DIOPT Version :9

Sequence 1:NP_725289.1 Gene:CG18278 / 36487 FlyBaseID:FBgn0033836 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_001107314.1 Gene:gns / 100135105 XenbaseID:XB-GENE-978429 Length:533 Species:Xenopus tropicalis


Alignment Length:502 Identity:229/502 - (45%)
Similarity:306/502 - (60%) Gaps:31/502 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ILVLACLGN-----TASEKLPNILLILSDDQDVELRGMFPMEHTIEMLGFGGALFHNAYTPSPIC 68
            :|:|..||:     ....:.||::|||:|||||.|.||.|::.|.|::...|.:|.|||..|.:|
 Frog    11 LLLLGLLGSLPVSVEGRSRKPNVVLILTDDQDVSLGGMTPLKKTKELIADHGMMFSNAYVASALC 75

  Fly    69 CPARTSLLTGMYAHNHGTRNNSVSGGCYGPHWRRALEPRALPYILQQHGYNTFFGGKYLNQY--- 130
            ||:|:|:|||.|.|||...||:|.|.|....|::..||...|.:|...||.|||.|||||||   
 Frog    76 CPSRSSILTGRYPHNHHVVNNTVEGNCSSKAWQKTQEPYTFPALLFSIGYQTFFAGKYLNQYGSE 140

  Fly   131 --WGAGDVPKGWNHFYGLHGNSRYYNYTLREN----SGNVHYESTYLTDLLRDRAADFLRNATQS 189
              .|...||.||::::.|..||:||||||.||    :...:|...||||:|.:.:.||| |...:
 Frog   141 EAGGINHVPPGWSYWFALEKNSKYYNYTLSENGRPKTHGENYSQDYLTDVLANVSLDFL-NYKSN 204

  Fly   190 SEPFFAMVAPPAAHEPFTPAPRHEGVFSHIEALRTPSFNQVKQDKHWLVRAARR-LPNETINTID 253
            ..|||.|:|.||.|.|:|.||::|..|.::.|.|..:||...:|||||:|.|:. :.|.:|..:|
 Frog   205 YAPFFMMIATPAPHSPWTAAPQYETAFLNVSAPRGSNFNVHGKDKHWLIRQAKSPMSNSSIQYLD 269

  Fly   254 TYFQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQFAQPFDKRQPYETDINVP 318
            ..|||||:|||:||:||..|:..|.....|:||:|.:|||||||.|||:.|.||||.||.||.||
 Frog   270 NAFQKRWQTLLSVDDLVEKLVKQLEARGELDNTFIFFTSDNGYHTGQFSLPIDKRQLYEFDIKVP 334

  Fly   319 LLIRGPGIAPESHIDTAVSLVDLAPTILAWADID-TPSYMDGQSFHELLLNKRRRVPFFERSLLI 382
            ||:|||||.|.....:.|:.:||.||||..|..| ..:.|||.||..:::|...  ..:...:|:
 Frog   335 LLVRGPGIKPNQITKSLVANIDLGPTILDIAGYDLNKTQMDGMSFLPVMINNSN--VNWRTDILV 397

  Fly   383 EYWGEGTLATFNPECP--WPEKDRLAQCTPAADCHCQDAWNNTYACLRNIRHREDRIYCEFRDNE 445
            ||.|||: .|.:|.||  .|   .::||.|  ||.|:|::||||||:|.|....|..||||.|.|
 Frog   398 EYQGEGS-NTSDPTCPALGP---GVSQCFP--DCVCEDSYNNTYACVRTIAAAYDLQYCEFDDAE 456

  Fly   446 NFLEAYDLQLDPFQMTNIA--YDLLPIERALYSLRLKNLTQCSGHSC 490
            .|.|.|::..||.|:||||  .|...:|:..:  ||..|..|||.||
 Frog   457 VFAEVYNITADPNQLTNIAKTIDQEILEKMNH--RLMMLQSCSGPSC 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18278NP_725289.1 G6S 24..467 CDD:293766 215/457 (47%)
AslA 24..464 CDD:225661 213/452 (47%)
gnsNP_001107314.1 G6S 30..478 CDD:293766 215/456 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 327 1.000 Domainoid score I1185
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H1568
Inparanoid 1 1.050 412 1.000 Inparanoid score I1810
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1273622at2759
OrthoFinder 1 1.000 - - FOG0001009
OrthoInspector 1 1.000 - - oto105421
Panther 1 1.100 - - O PTHR43108
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5154
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.160

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