DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Itga8 and scb

DIOPT Version :9

Sequence 1:NP_001167443.1 Gene:Itga8 / 364786 RGDID:621634 Length:1062 Species:Rattus norvegicus
Sequence 2:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster


Alignment Length:1180 Identity:290/1180 - (24%)
Similarity:468/1180 - (39%) Gaps:259/1180 - (21%)


- Green bases have known domain annotations that are detailed below.


  Rat    32 SPVSLAFNLDVDKLTVYSGPEGSYFGYSLDFYIPDARTASVLVGAPKANT---SQPDIVEGGAVY 93
            ||..|.|:::..:        .|||||:|..     |..|::||||:|.:   ||..|.|.||:|
  Fly    37 SPKHLKFHINQTR--------SSYFGYTLVI-----RQTSIIVGAPRAQSTLESQRTINETGAIY 88

  Rat    94 YCPWPAERSAQCKQIPFDTTNNRKIRVNGTKEPIEFKSNQWFGATV---RAHKGKVVACAPLYHW 155
            .|   :..:..|.....|:..|.....:......|.|..||.|.::   .....|::.|||.::.
  Fly    89 RC---SLTNGVCSPYVLDSRGNVDAPYSEYTFDSERKDFQWLGGSMDGGTKDTDKLLVCAPRFYA 150

  Rat   156 RTLKPNPAKDPVGTCYVAIQNFSAYAEH----SPCR--NSNVDPEGQGYCQAGFSLDFYKNGDL- 213
            .:.:.|...   |.||......::..:|    ||.|  :..|..|..|. :|.|   ||..|:| 
  Fly   151 PSSRDNHLH---GVCYWVNNTVASTPQHVTRISPLRLKSEQVKEEDNGN-KASF---FYIMGELG 208

  Rat   214 ------------IVGGPGSFYWQGQVITVSVADIIAN------YSFKDILRKLAAEKQTDVAPAS 260
                        ::|.||...|:|.||.....|.:.|      .:.|.:.|........|..|..
  Fly   209 LSAHVADDNTKFLIGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEH 273

  Rat   261 Y-------------DDSYLGYSVAAGEFTGDSLQEL--VAGIPRGAQNFG--YVSIINSTDMTFI 308
            |             :|||.||:|::|.|...:..:|  ||..|:..:..|  |:..:....:...
  Fly   274 YAPEIPTPGLWGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKY 338

  Rat   309 QNFTGEQMASYFGYTVVVSDVNNDGMDDILVGAPLFMEREFESNPREVGQVYLYLQVSALLFQDP 373
            ..|.|||...||||:|:..|:|.||..|::|.||.....:...|    |.:|:::......|:..
  Fly   339 HVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDN----GAIYVFINKGFFNFERQ 399

  Rat   374 QVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNARGLHSKPSQVLQ- 437
            .:.:..||..|||::::.|||:|.|||||:|:|.||||   .|.|.||.|:..||..:|||.|. 
  Fly   400 ILRSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAG---NGTVFIYLGSENGLRDQPSQRLDA 461

  Rat   438 -----GIWGSQTIPSGFGFSLRGDADIDKNDYPDLLVGAFGEGKVAVYRARPVVTVDAQLLLHPM 497
                 ..:||..    ||..|...:|||.|.:.|..:||.....|.:|||.|||.|.|.:.....
  Fly   462 PSQQPSKYGSHM----FGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESR 522

  Rat   498 IINLENKTCQIPEFPTPVACFSLRVCASIAGQSISNTVALMAEVQLDF-LKQKGAIKRTLFLHNH 561
            .|..|.:..:|      .||:.|         |.::|..|:.|.:|.. :.....:||..|....
  Fly   523 EIKPEQEKVKI------TACYRL---------STTSTDKLVQEQELAIRIAMDKQLKRVKFTQTQ 572

  Rat   562 QSHLIFPFVMRQQKSLHCQDFMVYLRDETEFR----DKLSPINVSLNYSL----DDSTFEDGLEV 618
            .:.:  .|.:.......|:||      ||:.|    |..:||::.::|.|    .||  |:..|.
  Fly   573 TNEI--SFKVNANFGEQCRDF------ETQVRYSEKDIFTPIDLEMHYELTKKVPDS--EEFCET 627

  Rat   619 KPILNHYRENVVTEQAHILVDCGEDNLCVPDLRLSARPDKQEIIIGDENHLMLIINARNEGEGAY 683
            ..|::.....|.|:.......|..| :|..||:|.::......|:|..:.|.|.....|.||.||
  Fly   628 CAIVDPTEPKVSTQNIIFSTGCATD-VCTADLQLRSKDVSPTYILGSADTLRLNYEITNIGETAY 691

  Rat   684 EAELFVMIPEEADYVGIERNNKGLRLLSCEYKMENVTRMVVCDL--GNPMVTGTNFSLGLRFAVP 746
            ..:..|.......:..:..|        |:.    |..::||||  |.|:..|...|:.:.|.|.
  Fly   692 LPQFNVTSTSRLAFAQVPGN--------CKV----VDAVMVCDLNRGRPLAKGDTDSVTISFDVS 744

  Rat   747 RLEKTNMSINFDLQIRSSNKDNPDSNFVSVQINVTAVAQVEIRGVSHPPQIVLPIHNWEPAEEPH 811
            :|...::.|:.:: ..:..:.||..|..:..|.:....:::..|.....||.|. |....||   
  Fly   745 QLSGQSLIIHAEV-FSTGYEQNPTDNRQTNVIGLKEFTEIDASGGQTNSQIDLE-HYSNSAE--- 804

  Rat   812 KEEEVGPLVEHIYELHNIGPSTISDSILEVGWPFSAREEFLLYVFHLQTLGPLQCQTNPE----- 871
                    :.:.||:.:.|||.|....:....|.:.:......:..:..:..|:.|.:.:     
  Fly   805 --------IVNNYEIKSNGPSVIEQLTVSFYIPIAYKVAGSTAIIPIINVTSLKMQASYDSQLLS 861

  Rat   872 ------------INP----------------------QDIKPAASPEDTPELSAFLRNATIPHLV 902
                        ::|                      .||..:.....|.|:......||.....
  Fly   862 IDLYDQNNTMLVVDPVEVTTTLSGGLERTVITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSR 926

  Rat   903 RKRDVPVVQPHRQSPAKILNCTNIDCLQISCAVGRLGGGESAVLK---------VRSRLWAH--- 955
            ::||:..:..:|:..|:|.|....|.|..... |:|....:.|..         ||:.:..|   
  Fly   927 KRRDLKALTANREQYARISNVKAHDLLSDDFK-GKLPVNRTIVFNCRDPEMTICVRAEMRVHFRP 990

  Rat   956 ---------------------------------TFLQRKNDPYALASLVSFEVKKIPYKEQPAKL 987
                                             ..||:|.||    :..||.:.:          
  Fly   991 EKSINLNMRYSVDLNEVNAILVDPWEYFVILTDLKLQKKGDP----TSTSFSINR---------- 1041

  Rat   988 PAGSTAIKTSVIWATPNVSFSIPLWVIILAILLGLLVLAILTLALWKCGFFDRARPPQDEMTDRE 1052
                 .|:.::|  :.:....:|:|:||::::.|||:|:.::..|:|.|||:|.:  :||: ||.
  Fly  1042 -----RIEPNII--SKHQETGLPIWIIIVSVIGGLLLLSAISYLLYKFGFFNRTK--KDEL-DRL 1096

  Rat  1053 QLTSDKTPEA 1062
            ...:...|||
  Fly  1097 VQQNPVEPEA 1106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Itga8NP_001167443.1 Int_alpha 53..111 CDD:214549 22/60 (37%)
Int_alpha 316..>364 CDD:214549 16/47 (34%)
Int_alpha 382..436 CDD:214549 28/53 (53%)
Int_alpha 447..491 CDD:214549 18/43 (42%)
Integrin_alpha2 482..933 CDD:285619 105/500 (21%)
Integrin_alpha 1034..1048 CDD:278771 6/13 (46%)
scbNP_523750.2 Int_alpha 51..103 CDD:214549 22/59 (37%)
FG-GAP 350..388 CDD:280083 15/41 (37%)
Int_alpha 409..459 CDD:214549 28/52 (54%)
Int_alpha 473..>515 CDD:214549 18/45 (40%)
Integrin_alpha2 507..829 CDD:285619 87/372 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335728
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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