Sequence 1: | NP_001167443.1 | Gene: | Itga8 / 364786 | RGDID: | 621634 | Length: | 1062 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523750.2 | Gene: | scb / 36692 | FlyBaseID: | FBgn0286785 | Length: | 1115 | Species: | Drosophila melanogaster |
Alignment Length: | 1180 | Identity: | 290/1180 - (24%) |
---|---|---|---|
Similarity: | 468/1180 - (39%) | Gaps: | 259/1180 - (21%) |
- Green bases have known domain annotations that are detailed below.
Rat 32 SPVSLAFNLDVDKLTVYSGPEGSYFGYSLDFYIPDARTASVLVGAPKANT---SQPDIVEGGAVY 93
Rat 94 YCPWPAERSAQCKQIPFDTTNNRKIRVNGTKEPIEFKSNQWFGATV---RAHKGKVVACAPLYHW 155
Rat 156 RTLKPNPAKDPVGTCYVAIQNFSAYAEH----SPCR--NSNVDPEGQGYCQAGFSLDFYKNGDL- 213
Rat 214 ------------IVGGPGSFYWQGQVITVSVADIIAN------YSFKDILRKLAAEKQTDVAPAS 260
Rat 261 Y-------------DDSYLGYSVAAGEFTGDSLQEL--VAGIPRGAQNFG--YVSIINSTDMTFI 308
Rat 309 QNFTGEQMASYFGYTVVVSDVNNDGMDDILVGAPLFMEREFESNPREVGQVYLYLQVSALLFQDP 373
Rat 374 QVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNARGLHSKPSQVLQ- 437
Rat 438 -----GIWGSQTIPSGFGFSLRGDADIDKNDYPDLLVGAFGEGKVAVYRARPVVTVDAQLLLHPM 497
Rat 498 IINLENKTCQIPEFPTPVACFSLRVCASIAGQSISNTVALMAEVQLDF-LKQKGAIKRTLFLHNH 561
Rat 562 QSHLIFPFVMRQQKSLHCQDFMVYLRDETEFR----DKLSPINVSLNYSL----DDSTFEDGLEV 618
Rat 619 KPILNHYRENVVTEQAHILVDCGEDNLCVPDLRLSARPDKQEIIIGDENHLMLIINARNEGEGAY 683
Rat 684 EAELFVMIPEEADYVGIERNNKGLRLLSCEYKMENVTRMVVCDL--GNPMVTGTNFSLGLRFAVP 746
Rat 747 RLEKTNMSINFDLQIRSSNKDNPDSNFVSVQINVTAVAQVEIRGVSHPPQIVLPIHNWEPAEEPH 811
Rat 812 KEEEVGPLVEHIYELHNIGPSTISDSILEVGWPFSAREEFLLYVFHLQTLGPLQCQTNPE----- 871
Rat 872 ------------INP----------------------QDIKPAASPEDTPELSAFLRNATIPHLV 902
Rat 903 RKRDVPVVQPHRQSPAKILNCTNIDCLQISCAVGRLGGGESAVLK---------VRSRLWAH--- 955
Rat 956 ---------------------------------TFLQRKNDPYALASLVSFEVKKIPYKEQPAKL 987
Rat 988 PAGSTAIKTSVIWATPNVSFSIPLWVIILAILLGLLVLAILTLALWKCGFFDRARPPQDEMTDRE 1052
Rat 1053 QLTSDKTPEA 1062 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Itga8 | NP_001167443.1 | Int_alpha | 53..111 | CDD:214549 | 22/60 (37%) |
Int_alpha | 316..>364 | CDD:214549 | 16/47 (34%) | ||
Int_alpha | 382..436 | CDD:214549 | 28/53 (53%) | ||
Int_alpha | 447..491 | CDD:214549 | 18/43 (42%) | ||
Integrin_alpha2 | 482..933 | CDD:285619 | 105/500 (21%) | ||
Integrin_alpha | 1034..1048 | CDD:278771 | 6/13 (46%) | ||
scb | NP_523750.2 | Int_alpha | 51..103 | CDD:214549 | 22/59 (37%) |
FG-GAP | 350..388 | CDD:280083 | 15/41 (37%) | ||
Int_alpha | 409..459 | CDD:214549 | 28/52 (54%) | ||
Int_alpha | 473..>515 | CDD:214549 | 18/45 (40%) | ||
Integrin_alpha2 | 507..829 | CDD:285619 | 87/372 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166335728 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3637 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.740 |