DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42319 and ldb3a

DIOPT Version :9

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_021336348.1 Gene:ldb3a / 794339 ZFINID:ZDB-GENE-040121-6 Length:746 Species:Danio rerio


Alignment Length:430 Identity:81/430 - (18%)
Similarity:150/430 - (34%) Gaps:98/430 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 WGFLITGGAEFHMPLTVFQVTPNGLADKAGIRLGDIILEINEEDASQLTLSQAHEKINSTPKKIH 115
            |||.:.||.:|:|||||.::||...|..:.:..||||:.|:......:|..:|..||.|....:.
Zfish    14 WGFRLQGGKDFNMPLTVSRITPGSKAASSNLIQGDIIVAIDGVSTDGMTHLEAQNKIKSANFNLA 78

  Fly   116 FLLRNMEEDDPMGQFEAGEEKSIVMRVPKPLPPPSGRIRASSIEMRLLEMQRKLSAIAEIPKILC 180
            ..::..:.                   |.|:|..:.||.:   .|.::..|:.::......:.|.
Zfish    79 LTMQRSKR-------------------PTPVPIATPRIES---PMPVIPHQKVITHAPANNEFLP 121

  Fly   181 STLATVSQNFGRMSESEVDEDDVGEEEAYVQRKFS-----YDEDAL------DFELRNGEQAG-- 232
            |......::....:...::....|.:...:..:::     |.:||:      ..:.|..|.:|  
Zfish   122 SFNPIALKDTALSTNKPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQSQARGSEMSGNL 186

  Fly   233 -------DTDSDEEDLVLVREED-AEDVDVPKGA-----KQSKLLKDVTPESDYASEANYPANEA 284
                   |:.|.....|:..|.| ....|..:.|     |..::|..:| .::|..:.:..|...
Zfish   187 PVKERVIDSASPVYQAVIPSEIDQLGPADWARRAAQLQSKSFRVLAHIT-GTEYMQDPDEEALRK 250

  Fly   285 SDDTESDDEDEP----------GSTVYFMKLP--------------AAAAEDTYSSTEDEDDSDF 325
            |.:....:...|          |.:...:.:|              ::|||....||........
Zfish   251 SRERFESEAKGPRFAKLKNWHNGLSAQILNVPQLPFLILPLPNIVSSSAAEHAPVSTSIAPVCPP 315

  Fly   326 LNTTYTWNLRNVPKLRINDAEAEGEL--------------TLGH-----------QAREVPQQEQ 365
            ........|.:.|.:.....|.|.||              ::|:           .::..|.|:.
Zfish   316 TMAALPNQLLSEPLIANQAPEPEVELIPEQTTVPSYSLQTSMGYTSQYKTSISSSYSQPPPMQQP 380

  Fly   366 PQEKQPCLEPEPPKVRPATPTPKAPPQESAEGQTQKLLFR 405
            |..:||.|..:||.::...|..:.||........|..|.:
Zfish   381 PLMQQPPLMQQPPLMQQPPPMHQHPPMHQPPPMQQPPLMQ 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_signaling 45..119 CDD:238492 24/67 (36%)
ldb3aXP_021336348.1 PDZ_signaling 13..82 CDD:238492 24/67 (36%)
DUF4749 149..239 CDD:318205 16/90 (18%)
LIM1_ZASP_Cypher 570..621 CDD:188838
LIM2_Enigma_like 629..680 CDD:188748
LIM3_ZASP_Cypher 688..742 CDD:188844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24214
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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