DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42319 and Pdlim4

DIOPT Version :10

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_062290.2 Gene:Pdlim4 / 30794 MGIID:1353470 Length:330 Species:Mus musculus


Alignment Length:112 Identity:29/112 - (25%)
Similarity:43/112 - (38%) Gaps:26/112 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GTQPVNIDDP-----KEFRS-LISWLEDQKIRHYTIENREQLKQLGSVDVWDAAYDK----YKTD 69
            |...|..||.     :::|. ||..:|..:|..|.    .|.|.|.|.|......|.    .:..
Mouse    27 GVFEVEEDDECWARLEDYRMLLIKTIEPSRITPYL----RQCKVLSSEDEEQIYNDPSLVIRRRK 87

  Fly    70 VGLPYELATRQEQLTWL-----LLHAVRLEYSDNVDTYRPLSGARKA 111
            ||:..::..|    |.|     .|.::.|:|.   |.||.::|...|
Mouse    88 VGVLLDILQR----TGLKGYEAFLESLELDYP---DVYRKITGKEPA 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_ZASP52-like 41..120 CDD:467281 20/80 (25%)
Pdlim4NP_062290.2 PDZ_PDLIM-like 4..82 CDD:467235 16/58 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..153 8/27 (30%)
DUF4749 134..230 CDD:464948
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..242
LIM_RIL 255..307 CDD:188835
Blue background indicates that the domain is not in the aligned region.

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