DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42319 and Pdlim4

DIOPT Version :10

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001380800.1 Gene:Pdlim4 / 24915 RGDID:3575 Length:335 Species:Rattus norvegicus


Alignment Length:185 Identity:45/185 - (24%)
Similarity:65/185 - (35%) Gaps:68/185 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SRWGFLITGGAEFHMPLTVFQVTPNGLADKAGIRLGDIILEINEEDASQLTLSQAHEKIN----- 108
            |.|||.:.||.:|..|||:.:|.....|..|.:..||:|..||.|....:|..:|..:|.     
  Rat    11 SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDH 75

  Fly   109 --------------STP------KKIHFLLRNMEEDDPMGQFE-------AGEEKSIVMRV---- 142
                          |:|      .:||.        ||..|..       |...:|.:..:    
  Rat    76 LTLSVSRPENKNWPSSPDDKAQAHRIHI--------DPEAQASLLQDGSPATSRRSSISGISLED 132

  Fly   143 -----------PKPLPPPSGRIRASSIEMRLLEMQRKLSAI-------AEIPKIL 179
                       |..||.|.   ..||.|:.|   ..::||:       |:.|:||
  Rat   133 NRSGLGSPYGQPPRLPVPH---NGSSNEVTL---PSQMSALHVSPPPSADTPRIL 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_ZASP52-like 41..120 CDD:467281 26/95 (27%)
Pdlim4NP_001380800.1 PDZ_PDLIM-like 4..82 CDD:467235 22/70 (31%)
DUF4749 139..238 CDD:464948 14/49 (29%)
LIM_RIL 260..312 CDD:188835
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.