DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42319 and Ldb3

DIOPT Version :9

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_036048.3 Gene:Ldb3 / 24131 MGIID:1344412 Length:723 Species:Mus musculus


Alignment Length:504 Identity:98/504 - (19%)
Similarity:151/504 - (29%) Gaps:194/504 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 WGFLITGGAEFHMPLTVFQVTPNGLADKAGIRLGDIILEINEEDASQLTLSQAHEKINSTPKKIH 115
            |||.:.||.:|:||||:.::||...|.::.:..||:::.|:..:...:|..:|..||.|....:.
Mouse    13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS 77

  Fly   116 FLLRNMEEDDPMGQFEAGEEKSIVMRVPKPL-----------------PPPSGRIRAS------- 156
            ..|:..:...|:      ...:..::.|.|:                 |.||...|||       
Mouse    78 LTLQKSKRPIPI------STTAPPIQSPLPVIPHQKDPALDTNGSLATPSPSPEARASPGALEFG 136

  Fly   157 ----------SIEMRLLEMQRKL----SAIAEI----------PKIL-----------------C 180
                      |:...|:|....:    |.:|:.          ||:|                 .
Mouse   137 DTFSSSFSQTSVCSPLMEASGPVLPLGSPVAKASSEGAQGSVSPKVLPGPSQPRQYNNPIGLYSA 201

  Fly   181 STLATVSQNF---------------GRMSESEVDEDDVGEEEAYVQRKFSYDEDALDFELRN--- 227
            .||..::|.:               |.:...::..|........|.:..|..||..|...|.   
Mouse   202 ETLREMAQMYQMSLRGKASGAGLLGGSLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSN 266

  Fly   228 ---------GEQAGD---TDSDEEDL---------VLVREEDAEDVDVPKGAKQSKLLKDV--TP 269
                     .:..|.   .|.|||.|         ..|....|....:|..|:.......:  :|
Mouse   267 LQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPASAQSPAAASPIAASP 331

  Fly   270 ESDYASEANYPANEASDDTESDDED-EPGSTVYFMKLPAAAAEDTYSSTEDEDDSDFLNTTYTWN 333
            ....|:..:..|..|:....|..|: .|.::.|   .|||||....|:          :|:|   
Mouse   332 TLATAAATHAAAASAAGPAASPVENPRPQASAY---SPAAAASPAPSA----------HTSY--- 380

  Fly   334 LRNVPKLRINDAEAEGELTLGHQAREV------PQQEQP--------------------QEKQPC 372
                         :||......:.|.|      |...||                    ....|.
Mouse   381 -------------SEGPAAPAPKPRVVTTASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPA 432

  Fly   373 LEPEP-------------PKVRPA---------TPTPKAP----PQESA 395
            ..|.|             |...||         ||||.|.    |.|||
Mouse   433 YTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESA 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_signaling 45..119 CDD:238492 21/67 (31%)
Ldb3NP_036048.3 PDZ_signaling 5..81 CDD:238492 21/67 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..134 8/50 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..193 5/28 (18%)
DUF4749 191..293 CDD:374237 16/101 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..423 33/171 (19%)
PHA03247 <378..528 CDD:223021 24/120 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 436..525 13/46 (28%)
LIM1_ZASP_Cypher 547..598 CDD:188838
LIM2_Enigma_like 606..657 CDD:188748
LIM3_ZASP_Cypher 665..719 CDD:188844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24214
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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