DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42319 and Ldb3

DIOPT Version :10

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_036048.3 Gene:Ldb3 / 24131 MGIID:1344412 Length:723 Species:Mus musculus


Alignment Length:504 Identity:98/504 - (19%)
Similarity:151/504 - (29%) Gaps:194/504 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 WGFLITGGAEFHMPLTVFQVTPNGLADKAGIRLGDIILEINEEDASQLTLSQAHEKINSTPKKIH 115
            |||.:.||.:|:||||:.::||...|.::.:..||:::.|:..:...:|..:|..||.|....:.
Mouse    13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS 77

  Fly   116 FLLRNMEEDDPMGQFEAGEEKSIVMRVPKPL-----------------PPPSGRIRAS------- 156
            ..|:..:...|:      ...:..::.|.|:                 |.||...|||       
Mouse    78 LTLQKSKRPIPI------STTAPPIQSPLPVIPHQKDPALDTNGSLATPSPSPEARASPGALEFG 136

  Fly   157 ----------SIEMRLLEMQRKL----SAIAEI----------PKIL-----------------C 180
                      |:...|:|....:    |.:|:.          ||:|                 .
Mouse   137 DTFSSSFSQTSVCSPLMEASGPVLPLGSPVAKASSEGAQGSVSPKVLPGPSQPRQYNNPIGLYSA 201

  Fly   181 STLATVSQNF---------------GRMSESEVDEDDVGEEEAYVQRKFSYDEDALDFELRN--- 227
            .||..::|.:               |.:...::..|........|.:..|..||..|...|.   
Mouse   202 ETLREMAQMYQMSLRGKASGAGLLGGSLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSN 266

  Fly   228 ---------GEQAGD---TDSDEEDL---------VLVREEDAEDVDVPKGAKQSKLLKDV--TP 269
                     .:..|.   .|.|||.|         ..|....|....:|..|:.......:  :|
Mouse   267 LQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPASAQSPAAASPIAASP 331

  Fly   270 ESDYASEANYPANEASDDTESDDED-EPGSTVYFMKLPAAAAEDTYSSTEDEDDSDFLNTTYTWN 333
            ....|:..:..|..|:....|..|: .|.::.|   .|||||....|:          :|:|   
Mouse   332 TLATAAATHAAAASAAGPAASPVENPRPQASAY---SPAAAASPAPSA----------HTSY--- 380

  Fly   334 LRNVPKLRINDAEAEGELTLGHQAREV------PQQEQP--------------------QEKQPC 372
                         :||......:.|.|      |...||                    ....|.
Mouse   381 -------------SEGPAAPAPKPRVVTTASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPA 432

  Fly   373 LEPEP-------------PKVRPA---------TPTPKAP----PQESA 395
            ..|.|             |...||         ||||.|.    |.|||
Mouse   433 YTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESA 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_ZASP52-like 41..120 CDD:467281 22/68 (32%)
Ldb3NP_036048.3 PDZ_PDLIM-like 4..82 CDD:467235 22/68 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..134 8/50 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..193 5/28 (18%)
DUF4749 191..294 CDD:464948 17/102 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..423 33/171 (19%)
PHA03247 <378..528 CDD:223021 24/120 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 436..525 13/46 (28%)
LIM1_ZASP_Cypher 547..598 CDD:188838
LIM2_Enigma_like 606..657 CDD:188748
LIM3_ZASP_Cypher 665..719 CDD:188844
Blue background indicates that the domain is not in the aligned region.

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